MmuINT1035549 @ mm10
Intron Retention
Gene
ENSMUSG00000046351 | Zfp322a
Description
zinc finger protein 322A [Source:MGI Symbol;Acc:MGI:2442566]
Coordinates
chr13:23357032-23362654:-
Coord C1 exon
chr13:23362580-23362654
Coord A exon
chr13:23357714-23362579
Coord C2 exon
chr13:23357032-23357713
Length
4866 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTTCTATTTTGTCTCATAGGTT
3' ss Score
10.38
Exon sequences
Seq C1 exon
GTCTGTGCACTGTGTAGGCCTGTTGCCCATGGGAGCCAGAAGAGTGTTGATGCCCTGGAACTGGAGTTACAGAAG
Seq A exon
GTGAGCTGTCATATGGGTGCTGGGAATCAAACGTGGGTACTCGGGAGGAATTGCCAGTTTTAACTGCTGAGCCATCTTTAGCCCAAGGAAATAGAATTCCTTTGGAAATCCATTTATGACAGCAAGTGCTTCTTAAACACTGGCTATATACTTAGTACTACTCTATTAGGGAAAGAACACTAAAAGCATCTTTCCTATATTTAACAGTATACAACAAGCTAATAAATGAATTATAGAGTGTATTAGAGTGTGATAAGTGCTCTGGAGAAGGATAAGACAGGAAAGGTGAGGTAACTTTGTCATTGGAGATTCACAATATTTAAATAGTGTGGCTGGAAACAGTTTGATTAAGAAGTGATAAATGAAAAAATAATTATTGGGGTATTAAGATATTGGCCATACCTGGAGCAAGAACACCAAAGTCGGAAGAAAGAAAGGGCACAAATCCCAAGTCAAGTATGTGTGGAAGAGAAACGGCTTAGGAAGCCATTGTGGCTGGATGAGATCCTGTAAGAAGACTGAGAAAGAAGTCAGAGAGTGGCAGGGCAGCTCCAGTTGGGACTCGGGCTATTGTAAAGATTTGGGTAGAAGAAAAAAATACTGAAAGAACAGGAGTACGTAATCTAGCTTTCTGTCTTAACAGGATTATGCTGGCTGCAGAGTAGAGAGTGTAGAGAAGGTTCCAATACACAGATGGGGCTTGTTAGCTTATAGAACTGCTTTAAAAAACCTACTATCGCCTGAGTGCTTCAGACAACCAAATTTTGCTCTTTTTTTCCCACACTCTGAAGACTAGAAATCCAGTATCGGTTTGTCTGGAAGTTGCCTTGCCTTACAACAGCTGCTTCCTCACTGTCCTCAGAGCCTTCAGTCTGGCTGTGCTTCTTTGCCAACTCTGGGTATCTTCATACGACCTCAGTTAGTCATTCTTTAAAAGATCAGATGACCAAATATATCACATTTTGAGATGGTAGGGATTAGGAATGGCATGCAGTTAGGCCTGTAACAGAGAAGAATCGGCTAAGAAGTAATTACAATAATCCACAGAAATAAAAGTGGTTTGGACCAGATTGGTATCAGCAGAAATTGATGAAAAGTGGTTGGATATGGATTTATGAATTTTTAAATGAAGCCAACAAATTCTTGACACCTTGATTGTGAGGTATAAAACAAAAGAGAATGCAGGGTGATCTTTCAAACTTTTGGATGAATTGAGAGCTTTCTGTCAGTGTAAAGAAAGCCTTTGCTTGCTTACTTTGACTGTAAGGCAAGATTAGATTCTAGACAGGTGCTAGGCTCTCTTTTCTCTAAACTCAGCCTCATAAAAGAAAGTAGGAATAATATTCTCTGATGTTTTAGGATTAGAGGATTGAGTGTAACAGGGACAAAATATGCTCTTTGCTCAAGACATTGTTAGTGATTTTTCGGATAACTTTCCTAAAAGGCCTTTGGTGAGTAGACAAGCAAATGAGTGTTTGCTGTGGATTCCTCCCACCAGGCAGTCTGTTAGCACTCTGACACCACTGTGCATCAATAGACAAAGTGAACTTTGATTCACCATCTTGGTTAGAAAAGCATATAGAAGTATCTGCTTATGTGATGAGAGTGGGTATTTTATTGTCTAACAAGGATTCATTTGATAGGTGTATTTTCACTTCTAGGATACTAGCAGATGAAGAGAGAAAAAGGGCTTAGAGTGTGAGGAGTTTTTCTGTGATGCCAGGAGACCTCTGACTGAAAGCAGCTACCATGCAGAATGTTGAAGATCTGGACACAATCACTGTTTAGCACAACTATGTCTGTGATATTTAGTTCACATTTCTCAAAGATTATTTGCCTCTTGTTATACTTGCTAGCCTTACAGCACATTGGTGTCTCACTCTGTCCCTCTGTAGTGCAAAGCTACAAAAGCTACATTTTCTACATATCTGTTTGCCTTGTATTCAGCTCTCATATTCTTCAAAGCTAAATTTTAAGACTTTTCCAAGTGATTTTTGGGACACTGGCATCTATTTATAGGTATTTTTTCTATTGATTAAATTTATCATTCACTGCAATAAGCAAGAGCAATGTCTTTGCTTTTCATAAGGAAATAATAAAAAATGCTGAATGAAAATTAGAAAACTGGAGTTAGTAAATTGATGAAATAAGAAGTCATCTATTGTCTCATTAGCAGAGGTAAACATGACCCTATGTGCCCTTGAGATCCTTTTGGGGTGTTTTCTCCAAGTTCTCCATTTTATTTTTTAGTGTGCTGTATTTGGCGAGCTTTTCCATTTGCTAACATGTCATTGTGAGTTTTGATATTTTTTTTCATTTACAGTTTTATATGTAGGCTCTAGGCCAGTATCTGTTTCTTGAATATTTAGCCTTTATGATAAATTGTGAACACACTTCCTAGAAAAATAGATTTAAAGTGAGCAACAAATGATCTGTAGGTTATATAGGAGTCTATAGATGCCAAATAAGAAGATCTGTTGTAAATTTGAGAACTTTGCATGTACCAGGTATTATCCTAGGTGGTAAACAGCAGTGAACAGACTGAATAATAGTAATGGAAACGTGTGTGGGGATTCTTGTCTATTAGGCTCATATTCAGCATAGAAAAATCAAATAGATGGAAAGGGCGTTATGTGAGTTGGGATGGTGCATAAGGTGGTCAGAAAAGGCCCCAGTGAGAATGTGATACAGTTGAGCAAAGATTTAAATGAGGTAAGAGAGCAGCTTTGAAGACAGCCTTGAGGAGAGTCCTTAGGCAAGGAGGGAGGGATAAGAGATGAAGGACATGAAGACCCTGAAATGGAAATAGTTCTGCTTTCTTGAACCATGACCAAGACCAGGGTGACCAGAGTAGAGGAACAGTACAGAAATGACTCAAGCTGGGAGCTAGGGGTCAAGTGTCCTTAGTGTTTGTAGTTTTCTAAAGGAATCTAGGTACAAGTTAAGGGTGAATGTCTAATTGGAATATGTATGTTCCAGAAACTTTTTTTTTTCTTTTGGTGTGTTCTAATATAAAGGAGAACAAAACGGGGAGAGTAGTTTGAGGATGAGGTGGCTGAGAGAAGTTGCTGGTTGTGCTTTTTGTTTTTATTTTGTTTTGTTTTTTAAGAAGAGAGAGGATAGCCTCTTTACTAACTAGAATGATCCTGTAGAAAGGATAAATCGATGATGCAGAAGAGTGATGGCAGAATGGCTGTCAGGATGCAGTTGTGAGGAAAGCAGATGGAGGCCCAAACATAGATGAACGTTTGTGGATTGAGCAGGAGCAGCTTGGCATCTTTGGTGAGAGTTGGAAGCGAGCTGCTTCAGCACGCCTGTAGGCAGTTTGCTAGGTGCGGGCAGTGGCACAGGGAGGGGTGCTGTTGGGCTTTACACTGATGAGTGTGCTTCAGTCTCGTTCTGCTTGCTCACTTTGATTCTCTTAGTAAAATACGGTGAAAAGTTATATTTACATCACTAAATAAGTCATTGATGTTTTATGAAAAAGGTTACACAAGACAGACAGTAAGTGTGAAGGACTGGGAGGCACATCTTCAGTTTGTTCACTTCCTAAACCAGTGTACTGCTTATCAGACCTGTCCTGACTTCCCAGCTAAATGAATGGAAAAGAGCAGCTCAGGGTAACCTTTTGTTTATTTACTTATGTGTGTAAATGTGTGCACATGGAGGATTCTGTGGGAATCAGTTTTCTTCTTTCCCCATGTAAGCCCAGGGGATCAAGCTCAGGCCAATGGGCTTGCTGCTTCTCACTGAAGTATCATTCTGGCCCAGAGCCTTGGGTTTCAAATTGCCAGGTTCATAAAAGAATGAGTTCCTATTGGTAGTTTATCATATGCAATGTCTATCATGTTTGTAATAATAGAGAAGAAAACCATAGATTGAGCATCCCTCAATCCAAAATTTTAAAATATGAAGTACTCCTAAATTTGAGTTATTTTGAGTGTCAAACTGATGCCATGAAAATTTCAAATCACAAGCTTTATTTTAGTCACAAAGTTATTAAAAATATATGAGGGCTGGTCAGATGGTTCAGTGGGTAAAAATGTTTCTCATGGAATTTGACCCCTAGGGTGCACAGAAAAGTGGAAGAAAAGAACAAACTCCTCAGAGTTGTCCTCTGACTCCAGTCATGTGCTGTAGCTTGGGTACAACAAGACTTTGTTTTTAATTTAAAAATACTTTGTGAGAGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGTCTGCTCTTCCAGAGGATCCAGGTTCAGTTCCCAGCACCCACATGGCAGTTTACAATTGTCTAGAACTCCAGTTCCAGGGCATCTGTCACTCTCACACAGACACATGCAGGCAAACGCACCAATTCACATAAAAAATTTAAAAACAAAACATTTATGAATTTATCTTCAGGTCCTGTGTATAAGATGAGTATGAAACCTGAATGAGTGTTGTGTTTAGACAGGCATCCCATCCCCAGAGCAACTCTTTATGTATATACAGGTATTTCAAAATCTCAGATCCAAAAAATTCTGTCTCCAGGTATTCTGGATCAGGTGTCCATGTAGAATTTACAGTTTATCCTCCCCTGTCTTTTCTAGTTTTCTCCCTCCCTTTCTTTGCATTTACTCTGTGTGTATGTAGGGGTAGGTGGGTGCTGCATGGTACCAGTGTGGATATTGGAGGACATGCAGTTCTCAACTTGTACCATGTAGATAGATTGTGGGAATAGAACTCTGGTCATCAGGTTTAGTAGCAAGCACCTTTATCCACCAAGCCATTTCACCAGCCCCAGTAAAGAGATTCTCTCAGTCTTTACTACAGTGATTTGGCTTTGAGGCTTCTTAGAGATAGAAATATAAATAATATTTCTATTTTGTCTCATAG
Seq C2 exon
GTTTGGAGGTACCAAGTAAGAAACTAATGTATATGATGCTGGAAACTTTTAAACACAAACTGCAAATGAATGAAAGGCTTAAAAAAGATATATTTTTGAAGTTACCAGAAAAATGACTATGAAAACAGGGATCAAGAAGACTGATGGAAAACCACTTAGGAGAGAACCATAGAAGATGTACACTTCAGAAGAGGAATGTAACCAGAGAACTCAAAAAAGGAAAACATACCATGTATGCCCTCAAAAGGGTGAAAAAGATTTATATTCGTGTACATGAGATTACTCAAATAGATAATCAAACATATCAGTGCCTTGAACGTGAACAAAACTTTTGTGAAAACTTAGCACGAATGTGTGAGAGAACATATACCGAGGAGAAACCTTATAGATGTGATATGTGTGAGAAAACCTTCATCCAAAGTTCAGATCTTATTTCCCACCAGAGGATCCATAATTACGAGAAACCTTATAAGTGTAGCAAATGTGAGAAGAGCTTTTGGCACCACTTAGCCCTTTCAGGACACCAGAGAACACATGCAGGTAAAAAGTTTTATACCTGTGACATCTGTGGCAAGAATTTTGGTCAGAGCTCTGATCTGCTTGTCCACCAGCGAAGCCATACAGGTGAAAAACCTTATCTGTGTAATGAGTGTGATAAATGCTTCAGTCGAAGTACAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046351:ENSMUST00000145451:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=12.8),PF0013017=C1_1=WD(100=28.3),PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=14.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types