HsaINT0186851 @ hg19
Intron Retention
Gene
ENSG00000181315 | ZNF322A
Description
zinc finger protein 322 [Source:HGNC Symbol;Acc:23640]
Coordinates
chr6:26634611-26643956:-
Coord C1 exon
chr6:26643887-26643956
Coord A exon
chr6:26638957-26643886
Coord C2 exon
chr6:26634611-26638956
Length
4930 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
ATTTCTACTTTGTCTCACAGGGT
3' ss Score
9.63
Exon sequences
Seq C1 exon
AATGCTATCTTCTTTGAGAAGTCAAATTGTCAGGATCAGGAATGTATGTTTTCTTCCATCTGGATTCTAG
Seq A exon
GTAAGCTGCAGTTACTTCAGTATTTTGAAGTATCCCTTCTCTTTCCCAGACTCCATCTCATCAGAGTACCTCCCATTCTTTGTGACATTCAGTCCTTTTATCAGACAAGGAGAGAAGTAGAATTTCAATGAGAATTCATACATGTACTCAGCAGATGCTTATTAAGCACCAACTTTGTACCTGGCATTACTGTATATGGTAAGGAAAGATAAAACAGACATCCTTGTCATATTTTAGCAATAGACAATAAACTGAATAAAGTGAATTATATAGTATGTTAGAAGGTTTTAAGTGCCATGAAGAAAAGTAAAGCAGAAAAGGGGAATAGTGAATGCTGGGGCATGAAGACTATTCACAACTTTAAACAGAGTGGTTAGGAAAGGCCTTCCTCAGAATTGACATCTGAAAAAATAGTCTTTGAAGGAATTAAGAGAAATTCATACACACATCTGGAGGAAGAAAGCTGTAGGCAGAAGAAAGAAAGGGCAAAGGCCCTAAGGATAGTATGTTTGGATGAGGAACAGCTAGGAAGCCATTGCGGCTGGATTAGAACATGCAAAGAGAAGAATAATATAAAAGGGTGTCAGAGAGGCAGTGACAGGCTAGCAGGGCAGCTCAAGTGGGCCTCTTGGGCTATTGTGAAAGTAAGAAATAAGAGTGGTTTGGACTGGAATGTAACAACAGAAGCTGGTGAGAAGTGGTTAGACTCTGGATGTGTTTTGAAATGGAGCCAACAAATTTGCTGATGGCTTGATTGTGAGGTGTGAGAAAGAAGAGTGCAGGATGACTTCAAGGTTTTAGCCTGAGGAAATAAAGGATGAACTTGCCATAAACTGAGATGAGGCAGGTGATAGGTGGAGTAGATCTGGAATCCAGCCCCAGTATAAGTCCTTTGCTCACTTCCTTTGACTATAAGGCAAAAACAGATACTTGCCATTTAGCTCTGTAAACTGAATTTAATAAAAGAAAATAGGAGTAATGCTTGTGATACGTTAGGCTTTGAGGATTGAGATTATGACGGTGACAGAGTATACTGTGGACTTGTAGTCTAAGGAGTTCTGTGATACCGTGAAAGTCACCTGAAAGATGTAATTTGGACCAAAAAAAAGTAATTTCTAGGACAGTTCATAGATCATGGAGATATGCTCAAATATTTCTGAAGGGGGCCTACCCCTCCACACCTGTGGGTATTTCTTGCAAGGTCCTGTGGGTAAGGTGGAGACGAGAGACTGAGAAAAGAAGACAAAGAGAGACAAAGACAGAGACAAAATATAGAGGAAGAAAAGTGGGCCCAGGGGACCGGCGCTCAGCAAGTGAGGACCTGCACCAGCACTGGTATCTGAGTTCCCTCAGTATTTATTGATCACTCTCTCACTATCTTGGTGAGGGGGATGTGGCAGGACTATAAGGTAATGGTGGGGAGAGGGTCAGCAGGAAAACATGTGAGCAAAGGACTCTGTGTCATAAATAAGTTTAAGGAAAGGTGCTGTGCCTGGATGTGCACATAGGCCAGATTTATGTTTGACTTTACACAAACATCTCAGTGCAGTGAAGAGCAGTATTGCCTCCAGCATGTCTCACCTCCAGCCATAAGGCGGTTTTCTCCTATCCAAGTAAATAGAATGTACAATCGGGTTTTACACCGAGACATTCCATTCCCAGGGATGAGCAGGAGACAGATGCCTTCCTCTTATCTCAACTGCAAAGAGGCCTTCTTCTTTCACTAATCCTCCTCAGCACAGACCCTTTACGGGTGTCGGGCTAGGGGACGGTAAGATCTTTCCCTTCCCACGAGGCCATATCTCAGGCTGTCTCAGTGAGGGGAAATCTTGGACAATACCCAGGCTTTCTTGGGCAGAGGTCCCTGCGGCCTTCCACAGTGCATTGTGTCCCTGGGTACTTGAGACTGGAGAATAGCAATGACTTTTACCAAGCATACTGCTTGCAAACACATTTTTACCAAGGCACATCCTGCACAGCCCTAAATCCATTAAACCTTGAGTCAATACTGCACATGTTTCTGCGAGCACAGGGCTGGGGCTAGAGTTACAGATTAACAGCACCTCAAGGCAGAAGAATTTTTCTGAGTACAGATCAAAATGGAGTTTCTTATGTCTTCCTTTTTCTACATAGACACAGTAACAGTCTGATCTCTCTTTCCCCCACATATTTGAAATGTAGGATTTTAATCACTGTATTTAGCATAAACATGTCTGTTTTGTTTAGCTTGTCTACTTCAGTTTTGACTTCCCTATTCTTGTTAGCCTTGCAGTGCATTTTTCTCCCATTATGTCCCGCGGTGGTCACAATACTACATTTCTTGTGGATCTGTGTTTTGACTCTGAAGAAATTGCACTACTCCCACCTCATTCAGTTCTTTCTCCTATCCCTTTAAGTTTTAGAACAGTTCTGAGTTGACATTTGAAATCTTGGTATATCTTTTTATATTTATAAATAACTTTTACTTACTACAATAAAATTGAGTAAAAGTAGCAGCCTCTGTGCCTTTCGCAAGGAAAGCATACAAATTGCTGAATGGAAATTAGAAAACTGTTGTTAACAAATTGATGAAACAGAATGTTATGTATCATCTCATTACCCAGAGGTAACCATGTTAGTACCATGTGTTTTGGATCCTTTTGACTTCCTGTTTTCTCTGAGTGCACATGTTCCTTTGTGTTCTGGTCCATTACACTTACTAATTTGCTGTATTCAGTGAGCTTTAATATCATTTCCTTTACAAATAGGCTCCAATCTAATATCTAGTTTCTTGGATTCTGGACCTTTTTGATAATTTAAGAAACCGTGTACCTTCTCCCCAGAAAAGTGCACATATACTGTACATTTTGCAGTCAAAGTTTTCATAAATTACCTGGGAGTCTGTGGATGCCAAGTAAGAACTCCTCTTCTAGGTTTGAGTGCCTACTCTGTGCCAGGCACTTTTCTGAGTGCTGGGGAAACAATAGTGAATGAAGTGAGCCAAAAATCCCTGTCTTTTAGGGGCTTACATTCTATGGAGAAAAACAAAATAGGAAAGGAGAGGAGTGTTGTTTTTGTGAGTCAGCTGGGACGGAGATGTGGTACAGTTTAGAATAGGGTGGTTGGAAATGACTTCACTGAGAATATGCCTGTTGAGCAAAGATGTGAATGAGGTGAGAGAGAGAGCCTTGAAGATTCCTGGAGGAAGAGCCCTTCATCCAGGAAGAGATATCAAGGATAAAGACCCTGAAATGGGAGTGAGTCTGGCTTGTTTGAACAACAGCAAAGACTCAGGGTGACTGGAGTGCAATGAGTAAGTAGAGGAAGAGCAGAGAAATGGATCAGAGTAGTAACTACGAGTCAGATTTCTTAAGAGCTTGTAGGTTTCTAACAGAAGCAGTTTTGGTGGAGTAGTGAGGGTTGATTGTTTAATTGGAGTATGTTCCAGAAACCTTGGAAGACAGAATTGGAGACAATGAGCAGGTTTATTTATTTCAAAGCGTTTTACTGCGGAGAGGAACAGAGAAATGGGACAACAGCCTGAGTGTGAGGCAGTTGAGAGGTTTTTCTTGTTGATTGTGCTTTTGTTTTTGAGAAGAGAAATAATATTGGAATGGTCCAATACGAAGGAATAAATTGATAATGCAGGAGAGGGAGGGTGGAATTGCTAGAGTGATGTCCTTGTGAACAAAGGGGGTATACAGATGGAAAGGCTATCCTTAGATTGAGCAAGGAAGTTTGTCATCCCTGGTAGCTGAAGGAAAGATGCAGTACGTGACCACACTTACAAGAGGTTGGTTGATGTGGTGGGGGCATGTGGAAAGGATTTTGGTTTTTGTGTATGTGTTGTTGTTTTGCTTGCTTGCTTCCATTTTCTTGGTAAAATAGGAAGCAAAATTATCAGGTTATACTCTTTAGGTGACAGACGAGGGGTCTGAATGTATGAGGGAGGGTCAAACATGAAAAGATCACTGAAGAGAGTTAAGTGTGAAGGATATGGAAAATGGCTTTTTTTCTTCCTTTTATTTCTGTTCTTTAGTCTATTTTTGGTAATTGATAAATGCATTGACTTATTACTCCCTCTGAACTCTCTTGTATCAACCTAACTTTTTTTTAAGATACTTGATCCTTTAGGTGTTTCTGTATGTGTACATACCTCTAAACCACAGAATGAGGAGGAAAAAACTTTTTTTTACAACTTTTCACCATGTAAAGAAAAGCCTGTTATAAAATCTATGTTCCAAGCCTAGACTTGTATCTATAATCAGTCAGGATTTTTCTTTTTGAGCAAGTTATGTGCTTATATAATCATATCAAAGCAGAATCTTAAGCCCCTTTGTCATAATAACAGTGATAGTAAGAGCCAAAACAGAGGGCTTACCAGGAGATTCATAGCGATTTAATATTCCACAGAACCGTGTAAGGTAGTTTCTATTATTAATCCACTTTACAGATGAGGAAACGAGGCATACAGTGGTTAAGAAACTTGCCTGATATCACCACTACGAATTAGAGTCATAGAAACCTTACTTTTCTCTCTGGTCACTTGGAATTCTAATGATCATTAACTACTTTCTTCCAAGCTTTCTGCAGAAAGGACTCCAGAGATACTCATTCACTGTCCCTTTTGATTTGCTTTCTTCATGAGCAGGCATAATAATTATTAGTCTTGTCTTGATTTCTCAACTGAAGCAAGGAAAGATGAAGAGCTCTTGTTTAAAATTACCCAGATTCATAGAGAAAAGAGTTCTTACTTGCAGTTTCCCATATGTATTGCTGATCAGTTTTATATTAGCAAAGAGTAAAAGTAAATAACTGATTTCAAGCCATATAAAACCTAGAAGACTTAGGGACTCTGATACAGAGTTTGTCTTTTCTGCAGTGATTTTAATTTTGAGAATTCTTTTCTTAGTCATAGGAATATAAATAATATTTCTACTTTGTCTCACAG
Seq C2 exon
GGTTGGAAATACCAAGTAAGGAATTAACATATATGATGCTGGAAACTTGTAGAGGCTCATGATTGAAAGGCCTGAAACAGATGTATCTTCCAAGTTCTTATCAAGAAAATGACTGTGAGGGCAACGATGGGTCAAGAAGACCAGCGGAAAACTCCCTAGGAGAGAGCCATAGAAAATGTACACTTCAGAAGAGAAATGTAATCAGAGAACTCAAAAAAGGAAAATATATAATGTATGCCCTCGGAAGGGTAAAAAGATTTTTATTCATATGCATGAGATTATTCAGATAGATGGTCATATATACCAGTGCCTTGAATGCAAGCAAAACTTCTGTGAAAACTTAGCTCTTATTATGTGTGAGAGAACCCATACTGGGGAGAAACCTTATAAATGTGATATGTGTGAGAAAACCTTTGTCCAAAGCTCAGATCTTACTTCACACCAGAGGATCCACAATTACGAGAAACCTTATAAATGTAGCAAATGTGAGAAGAGCTTTTGGCATCACTTAGCGCTTTCAGGACATCAGAGAACACATGCAGGTAAAAAATTCTATACATGTGACATTTGTGGCAAGAATTTTGGTCAGAGTTCTGATCTGCTTGTCCACCAGCGAAGCCATACTGGCGAGAAACCATATCTATGTAGTGAGTGTGACAAATGCTTCAGTAGAAGTACAAACCTCATAAGGCATCGAAGAACTCACACAGGTGAGAAACCATTTAAGTGTCTCGAGTGTGAAAAAGCTTTTAGTGGGAAATCAGATCTTATTAGCCACCAGAGAACTCACACTGGGGAAAGGCCCTACAAATGTAATAAGTGTGAGAAAAGTTACCGACACCGTTCAGCCTTCATTGTACATAAAAGAGTTCATACTGGGGAGAAGCCCTATAAGTGTGGTGCCTGTGAAAAATGCTTTGGCCAGAAATCAGACCTTATCGTGCACCAGAGAGTCCACACAGGTGAGAAGCCGTATAAATGCCTGGAATGTATGAGAAGTTTTACTCGGAGTGCCAACCTAATTAGGCACCAGGCAACTCACACTCACACTTTTAAATGCCTTGAATATGAAAAAAGCTTTAACTGTAGCTCAGATCTTATTGTACATCAGAGAATTCACATGGAAGAGAAACCACATCAGTGGTCTGCGTGTGAGAGTGGCTTCCTCCTAGGAATGGACTTTGTTGCCCAACAGAAAATGAGAACTCAAACAGAGGAGCTACACTATAAATACACTGTATGTGATAAAAGCTTCCACCAGAGTTCAGCCCTTCTTCAACATCAGACAGTACACATTGGTGAAAAACCGTTTGTCTGTAATGTGAGTGAAAAAGGTCTTGAGCTTAGCCCTCCCCATGCGTCAGAAGCCTCACAGATGTCTTGACCAGGCGAGAAGCTGTAATACCAATATTAAAAATTATTTATGTATCAGAGAACTCATTAAGATGAGGACAAATCTCAGACTTTGCTCAGAGCTCAGAATTCAGTGGGGACCAGAGAGCCTGCAATTGGAAATATGAGAAATTCTTTGCCCAGAGAGCTGCCCTAACAGAACACTTCATCCTCACTCCAACGAGAAATCTACAGATGCCCAGAGGTTTTGAAAACTTACCGTCTGAGCTCAAATTTGATCACTCACAAGAGGATTCATACAAGTGGGAAACCTTAGAAATGCACTGAGTGTGAGAGAGCTTTCTACTAATGCTCAGCCCTTCTCGTTGTAAGAGAATTCACACCGGAGAACAACTTTTTAAATGCCTTCAGTGTCAGTTGTGCTGCAGACAGTATGAACATCTCATTGGACCTCAGAAAACCCACCCTGGGGAGAAGCCCCAGCAAGTGTGAAAAAAGCTTCTAACAAAACTCTGACTTACCCATCAGAGAAGCCATACTGGTGAAAAATTGTATATTTGTCTTAAGTATGGCAAAAGCATTCGTTGGAGAGCCTTACTTGGGTTTGCACCCAAAAAAAAAAACCCAATCTGAGGAAAGACTGCAAGTGTCTGAATGAAGAGTGCTTGTCAATGATCAACTCTTGTGGTACATCAGGGAACTCACATAGGTGAAAAAACCCATACTTACCTTGAGTCTGAGAAAACCTTTGGTAGAAGCTCCTGTCTTATCAGGCCCCAAAAAACCTGTTCTGCAGTGAGAGATTTAATTGTGGGTGAGAATCTATGTACATATAATATGTATGAGAAGACTGTTCTCATAGTTAGTTGACTCATATGGTAGAGAGGACTTTACATGAAATCAGTATGAAAATAGTTTTTTAGATACCCAGAAGCTTGTTCTGGGAGAAGCTAGGGTGGGTCAGAGTAGACCTGATGGGTAACTCAGGTAAAGATGCTTTTCTTTTATCTGAACTACTTAATGATTGCTTTACTTTTACTTTTTAAAAAATTCAGAAATCCAATAAAGGAAAGGACGGTAACCTTATGATAGAAGGTGTGGCATGTGTTACTGTTGGGGGAAAGGAGTATATTGACTTTGCCTTGGTTGATATTTTTATGCTTGTCTAGGATGGGACTAGAGTGTTGATAGTAACATGGCAGCCTTTTGCTGGCAGTGAAATGAACTTAAGAAGCTAGGGAGTAGCTATCCTAGATCAAAACTCTCCTAATAGTTTTTCCTTTGCAGGACCAATCTTATAAAGAAACAGCATACTCAGCTTTTTACTTAGTGTCAGTTGAGGCATACTCTCAAAAGTTTTTTCCCCTAAAATATCTTTCAAGTTATTACTGGTATTTGAAATTTCAAGTTTAGAAATTCATTTCTTTTTAACTCAAAGTGCAAATTTCATATAATGATTATGATGGTTTTAGTGTCCATATTTTTGTGGCTTCACTTATCATCTCTTTCAGCAGTAGCTACCCACAGTCAGCTCCTAGTAAAATGGCTACAGGAAAACTGAAAGAAAAGTTTAAGCCTGAGTAGGCATAGAGTAAAAAATGCATAATGATGCATTATTAATATAAGAGTAAGGCTTTTTTTATTTTGAGTATCCTAACTCCAAACCTAGTGTTCTTTTCACTCCATTATCCTGCTGTTTATAGCAAATCAAGACCCATAATGATACGTCTTTCATTTATTTCAGTTCTGCCAAGGAAAGAGAAAATACCTTTTAATCCCAGGGAAAGGATTGCAATCACCACATTATAAGGTATATGGCGTGGAATGCAGAATTCTAAATACTAGAAGGGAAAAGTAGTTGGCAGATTCATCAGAGGCTTAAGGATAAGTACTTGTTTCCAATTTAAAAGTATAATTAGGATTGTCTTTAATGTTCTCTAGAAATACTATAATTAATCTAGAGATCTATCAATGGTCACATCTCAGTTTTTTTCTTCCCTGAGATTCAAAGACGTGTAATACCAATACTTCAGATTCCTATAGTATTTGGGACTTTGTAGACTAGTGAATAGATACTTTGTTGCTAGTCCAAATCCTCTGATTTTGGTTTGATTTGTCCTAGCAGATCCCTGAACTTCAGAGAGTATTGCCATTTGGATTCATGGAGTTGGCGAACTGCTACACTGCTACCTTGTGTATGGCTCTAAGCTTTGATCCTAATGACTGGTTGATGATCATGATAATATTAGGGCCAGTGAATATAGCTCATAGTGATAATAAGGATTCTAGGGTATTTTTTTTTCTTTTAGAAAAAGATCCTGGAAGTTTATTTGATCTGACATGTTTTTGTAATATTTAGAAATAGCTCTTGTATCATAAAAAGTTGCCCAGTATAAGACACACAAGATGTATTTTTTTTCTCTGGTGAAAATCATGCCTATCACTAGTATATGTTTGACATTTGTAGTATACTTAAAATAGTATTGGGTGTGAGGCATGGTGGTGATGAAAAGTAGTCCTTACGGCTACTTGTTAGTCATTAGAGAGAACATGGAGAAGGGGTCAAAGTTGGTATCATTAACAGGGCAATGACTTGACCCTTCTTTCAACTGATCTTACTGGTAGTTGTCTCTAGTTTTTAAGTAAATTAATGATGGACCATCCCCCAAACAGAGAACTATGGGGGTATGAAACAAGGCTGAAGGCTTTTAACCATGGGAGAAAAAGGTGTTGGTATTATTCATATAGCATAACCTGAGGTTGGAGAGGACCACTTGGGAGCCTGTAACCAAAACTAGAAGGTAACTTCTGGGATGGACGGAGGTTCCCTTGAAGCAGTGCCAACCTAAATCTACCTCAGGTAAGTAGTTAGATTAACTTTTTCAAGATTTCAGACCAAACAAGACAACTTGTATTCAGTTGATGTATTCCTATGCTTTAATGTTTTTGTTTGCCCTTAATTATTAAATAAACATTTGTTCTGAAAAACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181315-ZNF322A:NM_024639:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)