RnoINT0168039 @ rn6
Intron Retention
Gene
ENSRNOG00000017318 | Zfp322a
Description
zinc finger protein 322a [Source:RGD Symbol;Acc:1594230]
Coordinates
chr17:44031281-44039284:+
Coord C1 exon
chr17:44031281-44031354
Coord A exon
chr17:44031355-44036536
Coord C2 exon
chr17:44036537-44039284
Length
5182 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
ATTTCTACTTTATCTCATAGGTT
3' ss Score
9.91
Exon sequences
Seq C1 exon
AAAGCCGTTTTTTTAATTTTGATTTTTCTCAAGACCAAAAAGTGAATACTACCTGTCGTCTGTCTACATTATTG
Seq A exon
GTAAGCTACATTTTTCTTCAGTCTTATAAAATGGACCTTTTTCTTTTCAGACTGCACCTCACCGGAGTATGTGGGAAATTAGATATTTTTTTTTTAAATTCTAGTTTTTAATTATTTTATAATATGTATTGGTGTTTTGCTTGCATGAAAGTCTGTGCACTGTGTAGGCCTGGTGCCCATGGGAGCCAGAAAAGAGTGTTGATGCCTGGAACTGGAGTTATAAAAGATTGTGAGCTGTCATATGCTGGGAATCAAACTTGGGTAATCAAGAAGAGCTGCCAGTGGTAACTGCTGAGCTGTCTCTAGCCCAAGAAATAGAATTCCTTTGAAAATCCATTTATCACAGCAAGGGCTTCTTAAACACTGTTTATATACTTAGTACTACTCTACTAGGGAAAGAACACTAAAAGCATCTTTCTTATATTTAACAGTATACAATAAGCTAATAAGGGAATTATAGAGTGCATTAGGGTGTGATAAGTGCTCTGGGAAAGGATAAGACAGGAAAAGTGATAGGTAGCTTTGTCACTGGACGGTCACAATATTAAATAGAGTGGCTGGCAACAGTTTGATTACAAAATGATAAATGAAAAATTAGTTATTGGGGTATTAAGAGAGCCAAAGAAAGCCAAAGCCGGAAGAAAGAAAGCATAGATCCCAAGTAGAGTATGTGTAGAAGAGAAACAGTTTGGGAAGCCATTGTGGCTGGATTAGACCCTGTAAGAAGACTGAGGGAGAAGTCAGGCAGTGGCAAAGAGTAGCAGGGCAGCTCCAGCTGGGACTCTTGGACTATTGTGAAGATTTGAGTGGAGGAGTAAAATATTGAAAGAACAGAAGTACGTAGTCTAACTTTCTGTTTTAACAGGATTGTACTGACTGCCGAGTAGAGAGGGTAGCATTACAAAGATGGCTTGTTAGTTTGTTAGAACTTCTATTAAAAGCATACTATTGTCTGAGTTCTTAAGGATCCAAATTTTGCTCATTTTCTTTTTTTCACACCAGAAGACTAGAAATCCAGTATTAGTTTTCTGGAGATCACCTTGCCTTACAACAGCTGCTTTCTCACTGTGTCCTCAGTCTTCAGTCTGGCTGTACTTCTTTGCCAACTCTGGGTATCCTAAGCTCTTATTAGAGGAACATTAATGGAGTGATTCATATGGTCTCAGTCATTCTTTAAAAGATCATATGGCCAAATATATCACATTCTGAGATGGTAGGGATTAGGAATGGCACACAGTTAGGCCTGTAACAGAGAAGAATCGGCTAAGAAGTAATTATAATAATCCACAGAAGAGTGGTTTGAACCAGATTATAGCAGCAGAAATCAATGAAAAGTGGTTGGATATGGATTTATGAAGTTTTAAATGAAGCCAACAAATTCTTGACAGTTTGATTGTGAGGTATAAAACAAAAGCAAATGCAGGGTGATCTTTCAAAGTTTTGGATGAATTGAGAGTTTTCTGTAAGTGTAAAGAAGACCTTTGCTTACTTTGACTGTAAGCAATATTGGATTCTAGACAGGTTCTAGGCTCTCATTTTTGTAAACTCAGCCTCATAAAAGAAAGTAGGAATAATATTCTCTGATGTTTGAGGATTCAAGGATTGCTTGTGACAGGGATAAAGCATGCTCTTTGCTGAAGACATTGTTAGTGATTTTTCTGATAACTTTCCTAAAAGGCCTCTGGTAAATAGACAAGCAAATGAGTGTTAGATGTGGATTCCTCCCACCAGGCGGTCCTGTAGCATTCTGACACCCACCATTCATGAATAGACAAAGTGAACTGGGATTCACCATCTTGGTTAGAAAAACGTAGAGAAGTATCTGCTTATGTGATAAGGGTGAGTATTTTATTGACTAACAAGGGTTCACTTGATAGGTCTATTTGCACTTCCTAGGATACTATCATGTGAACAGAGAAAAAGGGCTTACAGTGTGAGGAGTTTCTCTGTGATGTCAGGAGACATCTGAATGACAGCAGCTACCACGCAGAATGTTGAAAATCTGGATACAATCACTGTTTAGCACAACTATGCTATTTATTTAGTTCAAATTTCTCCAAGACTATTTGCCTTTCCTCATACTCGCTAGCCTTACAGCACATTGGTGTCTCACTCTGTCCATCTGCAGCACAAAGCTACATTTTCTACACATCTGTTTGCCTAGTATTCAGCTCTCATATTCTTTGAAGCTAAATTTTAAAGCTTTTCCAAGTGACTTTAGGAACACTGGCAAATGTTTATAGGTATTTTTTTCTATTGATTATAACTCACTACAATAAGCAAGAGCAATGTCTTTGCTTTTCATAAGGAAATAATAAAAATTGCTGAATGAAAATTAGAAAACTGGAGTTAGTAAATTGATGAAATAAGAATTCATCTGTTGTGGGGTTGGGGATTTAGCTTAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTTGGTCCCCAGCTCTGGAAAAAAAAAAAAATTCATCTGTTGTATCATTAGCAGAGGTAAACATGATTGGAGTGTGCCCCTGAGATCCTTTTGGGCTGTTTTCTTCAAGTTCTGCTCGATTTTATTTTTTAGTGTGCTATATTTGGTGAGCCTTCCCATTTGCTAACATGCTATTTTTTGTGAGTTTTGGTATTTTTTTCATTACAGTTTTATATGTAGGCTCTAGGCCATTAACTGTTTCTTGAATATTTATGAAATTTATGATAAATTTTGAACACTCTTTCAAGAAAAATAGACAAAGTTATACAGGAGTCTGTAGATGCCAAATAAGATGATCTGTTGTAAATATGAGAATTCACATGTACCAGGTCTTGTCCTAGGTGTTAAACAGCAGTGAACAAACTGAATAAACTGAGTAATAGTAATGGAAACGTGTGTGGGGATTCTTGTCTATTGGGCTCATATTCAGTGGTGAAAAATCAAATAGGAAGATGGAAAGGGTAAAATGTGAGTTGGGATGATGAATAAGGTGGTCAGAAAAGACCCCAGTGATAATGTATAACAGTTGAGCAAAGATTTAAATGAGGTTAAGAGAGAAGCTTTGAAGACAATGTAGAGAAGTCCTTAGGCAAGGGAGGGTGGGAGAGATGAAGGACACGAAGACCCTGTAATGGAAATAGTTCTGCTTGTTTGAATCATGGCAAAGGCCAGGGTGTCCAGAATATGGGAACAGTACAGAAATGACTCAAGCTGAGAGTTAAGGGTCAGGTGTCCTTGATGTTTACAGTTTTCTAAAGGAATCTGGGTACAAGTTAGGGGTGAGTGTCTAATTGGAATATATATGTTCCAGAAACTAGAAGTCAAGAACCAGAGACAGTTAATAGATGGTTTTTCTTTTGGTGAGTTATAATATAAAGGAGAACAAAACAGAAAGAGAAGTTTGAGGCTGGTGGTTGAGAGGACTTGCTTGTTGGTTGTGCTTTTTGGTTTTGTTTTTTAAGAAGAGAAAGGATAGTCTCTTTACTAACTACAGTGATCCTGTAGAAGGGATAAATTGATGATGCAGGAGAGTGGTGGCAGAATGGCTGTCAGGATGTAATTGTGAAGAAAACAGATGGAGTCCCAAACATAGGTGAAAGTTTTGTGGGTTGAACAGCAGCAGCTTGGCGTCCTCAGTGAGAGTAGGGAGCAAGCTGGGCTTTAGCACACCTACAGGTGGTTTGCTAGGTGTTGGCAGGAACACAGGGAAGGGTGCTGTTTGGCTTTACACTGATGGGTGATGAATATGCTTAAATCTCGTTCTGTTTGCTCACTTTGAATCTCTTAGTAAAATAAGTTGAAAAGTTAATTTACATCACTAAATAAGTCAGTGATGCTTTGTGAAAAAGGTTTTACACAAGACAATAAGTGTAAAGAGGTGAGAAGACGTTCATCTTCAGTTTGTTCACTTCCTAAACAAATGGGTCTGCTTATCAGACCTGCCCTAATTTCCCAACTGAAAGAATTAGAAAAGAAGATCCCAAGTTAACTTTTTGTTTATTTACTTATATGTGTAAATGTGTGCATATGGAGGTCAGAAGGAAACCTGTGGGAATCAGTTTTCTTCTTCCTCATGTAAGCCCAGCGGATCAAGCTCAGGCCAACAGACTTGCTGCTTCTCACTGAGCCATCCTGCAGGCACAGATTTTCAAATTGCCAGGTTCATAAAAGAATGAGTTCCTATTGCTAGTTTATCATGTATAATGTCTGTCATGTTTGTAATAACAGAGGAGAAAACCACAGATTGAGCATCCCTCAATCCAAAATTTTAAAATATGAAGTATTCCGAAATTTGAGATATTTTGAGTGTCAAACTGTTGCTATGAAAATTTCAAATAACTTTGTTTTATTCACAAATTATTAAAAATGTATGAGGTCTGGTCAGATGGGTAAAAATGCTTGCCATGGAATTTGATCCCTAGGGTGCACATAAAGGTGAAAGAAAAGACCAAACCCCTCAGAGTTGTCCTCTGACTCCAGTGTGTGCTGTGGCACGGGCATAATAACAGGAATTTGTTTTTAATTTAAAAATACTTTATGAGGGGCTGGAGAGATGGCTCAAGGGTTAAGAGCACTGTCTGCTCTTCCAGAGGACCCAGGTTCAATTCCCAACATCTACATGGTAGTTTACAATTGTCTGTAATTCCAGTTCTAGGGCATCAGATACCCTCACACAGACACAGGCAGGCAATAGCACCAATTCACATAAAAAAATTAAAAAAAAAACTTTTATGAATTTGTCTTCAGGTCCTGTGTGTAAGATGAGTATGAAACATGAATGAGTGTTGTGTTTAGACACGCATCCCATCCCCAGAGCAACTCTGTATATGGAGGTATTTCAAAATCTCAGATCTAAAAATTTCTGTTCCAGGTATTCTGGATCTGGTTTGTGTAGAATTTCCAGTTTACCCTCCTTTTTTCTAGTTCTCTCCCTCCCTTTCTTTGCATTTACTCAGTGTGTGTGCAGGGGTAGGTAGGTGCTGCATGGCATTGGAGGACATGGTACAGTTCTCACTTGTACCATGTAGATAGGTTGTAAGAATAGAACTCAGGTCATCAAGTTTAGCAGCAGGCATCTTTATCAACCAACCCATTTCACCAGCCCCAGTAAAGAGTTTCTCCCAGTCTTTATTACAGTGATTTTGGTTTTGAGACTTATTAGTTATAGAAATATAAGTAATATTTCTACTTTATCTCATAG
Seq C2 exon
GTTTGGAGGTACCAAGTATATGATGCTGGAAATTTTTAAACACAAACTGCTAATGAATGAAAGGCTTAAAACAGATATATTTTTTAAGCTACCAGAAAAATGACTATGAAAACAGGGATCAAGAAGACTGATGGAAAACAATTTAGGAGGAAACCATAGAAAATGTACACTTCAGAAGAGAAATGTAACCAGAGAACTCAGAAAAGGAAAATACACCATGTATGCCCTCAGAAGGGGAAAAAGATATATATTCGTGTACATGAGATTACTCAAATAGATAATCAAATATATCAGTGCCTTGAACGTGAACAAAACTTTTGTGAAAACTTAGCACAAATGTGTGAAAGAACATATACTGGGGAGAAACCTTATAGATGTGATATGTGTGAGAAAACCTTCATCCAAAGTTCAGATCTTATTTCCCACCAGAGGATCCATAATTATGAAAAACCTTATAAATGTAGCAAATGTGAGAAGAGCTTTTGGCACCACTTAGCCCTTTCAGGACACCAGAGAACACATGCAGGTAAAAAGTTTTACACCTGTGACATCTGTGGCAAGAATTTTGGTCAGAGCTCTGATCTGCTTGTCCATCAGCGAAGCCATACAGGTGAAAAACCTTATCTGTGTAACGAATGTGATAAATGCTTCAGTCGAAGTACAAATCTCATAAGGCACCGAAGAACTCACACAGGTGAGAAACCATTTAAGTGTCTGGAATGTGAAAAAGCTTTTAGTGGAAAATCAGATCTTATTAGCCACCAAAGGACTCATACTGGTGAAAGGCCCTACAAATGCAATAAATGTGAGAAAAGTTACCGACATAGGTCCGCCTTCATTGTGCATAAAAGAGTTCATACTGGAGAGAAGCCGTATAAGTGTAGTGCCTGTGAGAAGTGCTTTGGCCAGAAATCAGACCTTATCGTACACCAGAGAATCCACACAGGTGAGAAACCTTATAAATGCTTGGAGTGTATGAGAAGTTTTACTCGGAGTGCCAACCTCATTAGGCACCAGGCAACTCACACTCATACTTTCAAATGCCTTGAATATGAGAAAAGTTTCAACAGTAGCTCAGACTTTATTGTACATCAGAGAATTCATATGGAAGAAAAACCACATCAATGGTCTATGTGTGAGAGTGGCTTCCTCCTAGGTATGGACTTCGTTGCCCAGCAGAAAATGAGGACTCAAACAGAGGAGCTCCATTATAAATATGGTGCATGTAATAAAAGCTTTCATCATAGCTCAGCCCTTCTTCAACATCAGACAGTGCACATTGATGACGAATACATCTGTAATATGAGTGAAAAAGGGCTTGATCTCAGCTCTCATGCATCGGAAACCTCAAGGATGTCTTGACAAGTCACATAACTTTAAAAATATATTTATATATCAGAATTCAGTAAGAGAAAGACTCCTAGGTAAATTTCAGATTTCCCTTCGATCTCAGACTTCATTGGGGTCCAGAGAAAGAGTCTACAGTCTTGGGAACTGTAAGAAAAGCTTTATTGTAGAGAGTGGCCATGTCAGGACACCTTTATTGCCACACTTGGGAAGAACTCCACAAATTCTCTGGGTTGGAAAACCTTCCTCACAAGATTCATACAGGTAGGAAGCTTTACAATGCAGTATGAGAGCTGTCCAGTAGTGTTAAGCCCTCATTTTTACAAGACAGTTCACACCAGAGAACAACCATATAAATGTTTTGTGTTGGTAATACCTCAGACAGTATGTATGCCTTATTGGGTATCAAAAAATTCAGCCTGGGGAGAAGCCCCAGACATTACAGGAAAATGCTTCTAATAGAACTTTGATTTTCTTACCCTTCAGAGAAGCCATACTGGGGTAAATGGATATTTGAGTGTGGCAAAAACAATTGTTGGAGAGTCATACATGGGTTTGCATTCTCCTAGACAAAAATCAGAGTTCCTGAATGAAGAAAACTTATTAATTTTCAGCTCTTGGGGCATATCAGGGTACTCACATTAGTGAAAATCCATAAATGCATTGTGTCTGAGAAGCTAGAAAGAAGCTCCTATCTAGTCGGGCCCCAGAGAAGGAGTTCTATGGAGGAGTTGTTCCAGTAAGAGATCTAATTGTGGGTGAGAATCTGTATATATGCTGTGTATGCAAAGAGCTGTTCTCATAGTTGAACCACATTGTGGAAAAAACAAAAAACAACAACAACAAGAACAACAAAAAAACGAGTTGTATGGAAATAATGTCTTAGCAACCCAAAAGCTTGTTCTGGAGGTGCTGGGGCAGGTTAGCATGGATCTGGAGGGTAACTCAGGTAAAGATGCTTTTCTTTTGTCTCAACCACTTGATGATTGCTTTAGTTTCACTTTAAAAAAAAGTCATATATCCAATAAAGGAAAGAATGTACTCTTGTGTATAAGTAGGGCGTGGTTTATTGTTGGATTCAGAAAGCAGTGCTTTGACTTTTGCTTCCCATTTTTTTTTTTTTCCTTAAAATCTCTTGGCCAGAATGAGAATGGTGTGTGGCTAAGAAGCTCGGGAGTACTTAGTTTGGGTTAAAATTCTTAGTACTTTCCTTTTGGCGTGACCATCCTCAGCAAAAAGCAGAGCACTCAGTTCTTTCGCTTAGTGTTGACATCTGCCCTCAGAATTGTCCCAATTTGTCTAAAATTGACCTTAAAATTTCTTTTTGAGTTATCACTGTGGCCATTGAAATTTCATATTTGTAGGTTCATTTATTTTCATGTAAAAATAACAAGTTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017318:ENSRNOT00000023268:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]