BtaINT0093652 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23224892-23227026:+
Coord C1 exon
chr13:23224892-23225046
Coord A exon
chr13:23225047-23226837
Coord C2 exon
chr13:23226838-23227026
Length
1791 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTATTCAAATCTCTGCTAGTTT
3' ss Score
5.61
Exon sequences
Seq C1 exon
GTCCCCTGTAAGCAACTTACAGATCCGCTATGACCAACCAGGCAACAGCAGTTTGGAAAACCTGCCCCCAGTAGCAGCCAGCATAGAGCAGCTTCTGGAGAGGCAGTGGAGTGAAGGACAGCAGTTTTTATTAGAACAGGGCACTCCTAGTGACA
Seq A exon
GTAAGTATTCTCTTCTTGTCCTTAAAGGAAGAGCAGTAGATGGATGGATGGATAGATGAACATTCAGGTGGACAGATGTAGAAGTCACACTTTGTCAAGAATAGCATTGAAATTATGATGTATAATATGGTGAGAAAGTGTAATGTAGTGGCTTAATAGAACAGAGGCTACAGTTTACCCCTTGGACTCGAATTCTGTTTTTACCTGTTATTAAAACAGTGTGATCTTGGGCAAGTGTGTTAATGTCAATATGCTGTAGTTTTCCATTTATAGGATGAGAATCATAATGTACCTATATCACAGTATTGTTTTGAGGGTTAGATGACTTAAAAGATAAAATGAACATTGCTGGCTTGTAGAATTCACTGGTTCTTATTACTTTTTATAATTATTAATATTAAAATATTAGTACTTTGTTTCTACATTCTACTTTGTTCTAATCAGTTAAATTTCACTAAAAATATGAGCTGTAGCTTCTTTTAGCTGAATTGTTTGAATAAAACTTGCTCACCACTGCAGAATTTATTTTTTTAAAATGTGTATAGTCAAGGCCAACTCTCTTGATTTTATAATTTGGATGAGAAAGAATAAGTACTAAGTTACATATACATTATACATATACTATATATTATATCATTTACTTGCTAAATTATGTAGTGTCTATTATATATACGTATTTAGTATCTTTACAATTTTAAGTGTCTATCTTACTTAAATATAGTGTTTTATTTTTTTTTTTTCTAATAATTTGAGGGGGTATAAGCTTTTACTTCTTTATTTTTTAAAACAAAACAAAATATTTTGCTTATCATTAGACAGGTGCTGTAAATGTGGTATTTTTATGAATGGCGCTCTTGACAAGAAATGCTAATTGTGAGGAAATTCATGCCAGGATAATCCTTTAAACATGATAGCTGGAGGACAGGTTTAGCTTAGTCTTATTGCATCTCATTTGGGTACACTAAGGGATCTGTGTGGGATCTTGAAGAGGAGGGATAAAAGTTAAATCCTTGGGAAATGACCGTATGTGTCTGTACCAGTAGAATTGTGTCTTTTGAAGGCCCTGAGGGCATGTTAAACAAATACAACTTTTTAATACATAGAACTTTAAAGTGTCCATCATCATGGCATCTCTGCTGTCCGTTGAGAGGTCCGAGCTGTGGCAGGGATGGAAAAAGTATTTGAGGTGGTGAAACAGGACAGCCTGTGTGCAGAGGACATGCCTTTCCTGGGAGCCAGGAGTAGGGCTTTGGTGCGCGTACACTGCTCCCTGCTGGGCGTGTGTGGATCCGCAGGCTGAGCCGCTGGGCTTCCTCATCCAGTGTCCTCCGGTGAATTGCTTAGTTTAACCAAACAACAAAAAATGCTTGTGCTCTTTATTTGTGTCGAAGGACATTGTTGTGTGTGATTCTTTGACCTTTAAAAAATGATTTTAATGAAAAATCATGGCGGGCACTTTGAATTTTTAATTAGGCTTTTATTTTGATGAAAATCAAATGTTCCTGTGATTTTTATTTGAGAATGGAAGTTACCTGAACTAGGTTTGGGTTTTTTGTTAGTGGCAACAAAGTTTCTACGCAGTACATCTTGGAACAATATCCCTTTATGCTTACATAGGTAGAAATATATTATTATATATTTGTATCTGCATAAATTTAGAAATAGAACCTTGTCACTTAGAAATGCTTTACAGAATTTCTACTTTTCTGTTTTATTTCTAAAGTTACTGACACAAGTCCATAAAGTACCTGGTCCTGTGTGTGAAATTGTCTTTATTCAAATCTCTGCTAG
Seq C2 exon
TTTTAGGGATGCTGAAGTCATTACATCAACTTCAAGTAGAAAATCGAAGATTAGAGGAACAGATTAAAAACTTGACTGCCAAAAAGGAACGCCTTCAATTATTGAATGCACAGCTCTCAGTGCCTTTTCCAACAATAACAGCAAACCCCAGCCCATCTCATCAAATGCATGCATTTCCAGCACAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074:ENSBTAT00000061645:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.703
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGCAACTTACAGATCCGCT
R:
TCTGTGCTGGAAATGCATGCA
Band lengths:
334-2125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development