RnoINT0092924 @ rn6
Intron Retention
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84969763-84972256:+
Coord C1 exon
chr17:84969763-84969917
Coord A exon
chr17:84969918-84972067
Coord C2 exon
chr17:84972068-84972256
Length
2150 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATCACACAAATATTTGCCAGTTT
3' ss Score
2.84
Exon sequences
Seq C1 exon
ATCCCCTGTGAGCAACTTGCAGATTCGATATGATCAGCCAAGCAGCAGTGGTTTGGAAAGCCTGCCTCCAGTGGCAGTGAGTATTGAGCAGCTCTTGGAGAGGCAATGGAGCGAAGGGCAGCAGTTTTTATTAGAGCAGGGCACTCCGAGTGACA
Seq A exon
GTAAGTAGCCACTGCTTGCGTCTAAGACGGGCACTTGGAAGCGGGCGGTGGTGGCGCACGCTCGGGAGGCAGAGGGAGGCGGGTCTCTGGGGTCTCGGTCGGGCTGATCTACAAATCACGTTCCAGGGTAGCTGGATCTGCACAGAGAAACTTCCCCGAAAAATACAAACCAATAAATGAAACACAGCAGCAGAAAGTGTTTGCCCAGAATAATGACACTGTGTTACGTATTATATGTAGTTAGAGAAGGTGTGTGTCACGCTTGGTCAAAGCTATCGCTGCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGTGCAGTGTCTTGTGAACTCAAGAAGAGTGAAACTGTACCTTTTTCCTAGGGTTGGTATGAAGATAAATGACATGAACACTGACAAAACTTGCTGTGTTATTTGGTTGCTGGTTGAAATAAATGGCTGCGGCTGTCCCTCTGCCCACTAGACTTTGTTCTTGACCACTTGTGAGAACACTTGGTCTCTCCCCTCAGCTCTGGATTTAAACAAAGATTCCTATGCACAGATATCTTCTTTTAAAAAGAAAATGTCTCTAGTCAGCTGTAGCTAGGTATCAGGTTTTAGAATTTGAAGGAATAATAACTAGGCAGACATAGTGACACCCATTTTTGATTAATAATGCCACTTACCAGGTAGAAAGCAGGTGGCACACATCTTTAATCCCAGCGCTTGGAAGGCAGAGGCAGACTGATCTCTTGTGAGTTTGAGGCTAGCCTGGGTCTACGTAATGAATTCCAAAAAACCAGGGCTACTTTTTAGACCCTGTTCTTGCAAAAGGAATAGTAATTAGTAAATTTTTATTTAATTAGAATGTTAATCATACTTATGAGATTATATGGTATGTTTTGTATATATACATAGTATTACTACCAACGGGGTGGGGTGGGGTGTGGTAACATGATGCCATAAAAACACAGTTGGAGCAGCTTAGGGAGAAGAGTTAGGTGGCTTTTATCATTTTGGTATGGAAAATTTCAGTGCTTTATTTTTTTTGTTGTTGTTGTTTTTTTGTTTTTGTTTTTTAAAAACTAGGCTTTAAAAAATATGCTAGTGAGCTAATAAGTGCCTTGAATTGATCCTTTATGTATGGTGCCCCAAAACTGTTGACTGTAAGGAAACTGATGTGGGCAGAACCTTTTAAACAGAGCAAAGATGTGGGCAGAGGGCAGGCTAGCTGTATTATCGTTTCTCATCTGGGCACCTTAAGGGGATAAAACTTAAATCTTGTAATGCTAGAGGGTCCTTGAAAGGCCCTGAGCTCATGTTAAGCAAATACGACTTTTTCATACCTGGAGTTTTTCAGATGTCCATCACCATTACAACAGTGCTCTTGATTGGCAGTTAAAGTCCAAGCCTTGGAAGAATTAACACAGTATCTAAATGGTCAGGCAGGGCCCAAAGCTTGTTAACAGATGAGGAGGCCTCGTCCTCCAGAGAGAAGTTAAGGGCTGCAGAGACAGCGCTCCCTGCTGGGAGCCTGCAGAGAGACATGGTGAGCAGCTGGCACTGGCCGGCTTTCTGCCAGGTGTGTGGCAGCATTGGCGGCTGTGGCTGCGACTGCTTGGGCTCCTGAGGAGTCTGCCCAGGCCCTGTGCATGCCAGCTGCATGCTCGCTCCCCACAGACTGCCTCTCCCAGCGCCTGCATGTTTAAACACCTAAGAAAGCACGTCCTTATTTGAGTAAAGCATATTGGTGGTAATTTTCCTATTGTAAGTCTCAGCTATTGTCATCATTATTTTTTTAATAAAAATTATGAAAAGTACCTTGAAATTTTAATTTTTATTTTGAGGAAACCTCTTTTTTGAGGATAGAAACTACGTGATGGGGGTGGGTTGCTGTTTGTCAGACACACATGCTTACACAGGTATATGCAGCAAAGCTTCCGTGTGGTGGATCTGTGTACAGTCTTCCTTGTGTACACACTCAATAGAACATGATGTTTGTAGCTACAGTCAGACCTTGGAACAAGGCTCAGTCATGCCAGGATTAGCCCACACGATTTCCACATGTTTAGGTCTGAAGCAGTTCACACTATGACCATAAAGTACTTAGTCGTGGGAGTGGAGTTGTCTTTACTTTAAAATCACACAAATATTTGCCAG
Seq C2 exon
TTTTAGGAATGTTAAAGTCATTACATCAACTTCAAGTTGAAAATCGAAGATTAGAAGAACAGATTAAAAACTTGACTGCCAAAAAAGAACGTCTTCAGTTGTTGAACGCACAGCTTTCAGTGCCTTTCCCAGCAATAACGACAAACCCTAGTCCATCTCATCAGATACACACATACACAGCACAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249:ENSRNOT00000034157:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=NA C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]