GgaINT0102645 @ galGal3
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17843950-17846207:-
Coord C1 exon
chr2:17846053-17846207
Coord A exon
chr2:17844139-17846052
Coord C2 exon
chr2:17843950-17844138
Length
1914 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CATCCATGTTTTTATCTTAGTTT
3' ss Score
7.47
Exon sequences
Seq C1 exon
ATCCCCTGTAAGCAGCTTGCAGGTCCGCTATGACCAATCAGGAAACAACTGTGGGGACAGTTTGCCCCCGGTAGCAGCCAGCATAGAACAGCTGCTGGAGAGGCAATGGAGCGAAGGACAACAGTTCTTACTGGAACAAGGCACCCCCAGTGACA
Seq A exon
GTAAGTACTCCCGTTCTGTCCGGGACAGTCTGTTACCTGTGTTATCCATAGCTGCCACACAGTCATTGTCCAAGAATCTTACAAAGACTTATTTTCTGTTAGGAACAGAAATATAAACGTAGTGTTGAATTACAGTGTAGGTGTTAGCCTGACAGTGGATTATAAGAGAGTTCTGTCTTTACATTTTTACGAATGGGGAGATGGTGTCAGGCCAGAGGAAGTGCCTTGTAGATCCAGCTGGTCGGCTGTGGAGTTTGAAAACATCCTGCACTCTTAGATCCACTGCTGCAAACGTGCAGAGCTCTTGCAGACTATGCATTAGTAAAGCACAGTTTGTTTCACATAATGTGATCCACACTGGTAATTTTTTTATTATTAGATTGTAAGAAACTGCCATTTCTGTTGCTGTTTTTAAAAGATACATTTACACATGGTGGGCAGGTGTCCTGCTGCGCTTTGTGGCTTTGTGTTTTGTGTCTCTCAGGAAGTTCTCCAAGTAAACAAATTGCTTTTTCCAGTTACATGTAGTAGCTTGGAATAGTCTCAGAGTGAATAGCGAAGTGCAGAAGGGATGAGTAGATCACTTGGATCTCTATATTCCAGAAACTGTGATTGAATATATTAAAAAAAAATTAATTCCTGTTGGTTTTTTTTGTGTTATGTTTTATTGAATGTGTTATTCTTCTTGTTGGTAGTGCAAAGTGGTATCTAGTTGGTATTTTTATGAATGGTATCCTGACAAAAATGCTAATTGTGAGGAAATTCATGCAGGGATAATCCTTTAAACATGATAGCTGGAGGACAGGTTTAGCTAAGTCTTATTGCATCTCATTTGGGCTCACTGAGGGTTCCTTTGTATGTTCTTGAAGAGGAGGGATAAAAGCTAAATCCTTGGGAAATGACCAGATGTGCCTATACCAGTAGACTTATGTCTGTAGTAGGCCCAGAGGTCATGTTAAACAAATACAATTTAGAATTAAAAAAAAAAAAAATAAATGGTTATCCTTGTGCCTTTACAGTCATACTCCAATGCTAGTTGGGAAATCCACATTCTGAAACAAAATCAGAGTTTGAGCAAAGTGAGCTTGCTGAAATATCATGTTAGTAAGGAAGATGATGCCCTTTATCTGGTGGGGAAAAAAAAAAATGAAGAAAAAAAGAAGGGGGAAAAAAAAAGGGGGTGGTGACTGGAGTGCTCACACAGTGCTCCCTGCTGGGTGATTTGTAGATCGCCACTCAAAGCAAATGGGAGAGTGCTGCCAGCAAGGTGGGTCGTGGTAGCTTAACAGTGGGTGAAATCTTGACATTGTTAGTCTAAGTTCGGGTATCATTGTACAGCAGATTAAAATAATAACTCCATTTTCACAAACCTGTGCTTATTTTTACATAGTTGTAGCTGCTTGGTTGTATCGTTAGTTGAATGCGTATTTTCCAAATCTTTCCTGTTTTGATGGCATTTAATATTTTAATACGACACCTGAAATAGAATTTTCCCAATTAGGCTCTTATAGTACTGGTACTATAGTCCATAGTACTGGTTTTGTATTCTGGTTTTGGAGCACAGTTGTCGTGTACTTGTGTTTACTCAATGTCAGCCCCAGTGCTGAGACTTCACGTGTAGTAAGGCAGGGTGTAGATACAGCACGCCGTTACTCTCTCATGCTACATACTTTTTTCCAGACTTCAAATTGCACAAAATTGGTCCAATTAAAGTCAAATTTATCATCATCTCTCATTGATAATGTTGCTTTTATTTTCACATACAGCTCTATTTGCTACTCCTATTTTGTGATATATACATTAGCGTTTCTCATTTTCTAAACTTCAGGGATATGTTGTGCCACCACGAGTGACTTTACTGAAAGAAGAAAATCTTCGTGGTCATGAAAGATAACATCCATGTTTTTATCTTAG
Seq C2 exon
TTTTAGGAATGCTTAAATCATTGCACCAACTTCAGGTTGAAAACAGGAGGTTGGAAGAGCAGATCAAGAATCTGACTGCTAAAAAGGAACGGCTTCAGCTTCTCAATGCACAGCTTTCGGTGCCCTTTCCAACACTGACTTCAAATCCCAGCCCTTCTCATCAAGTACATGCCTTTCCTGTGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=NA C2=0.484
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCCTGTAAGCAGCTTGC
R:
CTGCTTGCACAGGAAAGGCAT
Band lengths:
344-2258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]