BtaINT0093653 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23226838-23227534:+
Coord C1 exon
chr13:23226838-23227026
Coord A exon
chr13:23227027-23227445
Coord C2 exon
chr13:23227446-23227534
Length
419 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTGTCTTTTTTCTTTTCTAGCTC
3' ss Score
11.84
Exon sequences
Seq C1 exon
TTTTAGGGATGCTGAAGTCATTACATCAACTTCAAGTAGAAAATCGAAGATTAGAGGAACAGATTAAAAACTTGACTGCCAAAAAGGAACGCCTTCAATTATTGAATGCACAGCTCTCAGTGCCTTTTCCAACAATAACAGCAAACCCCAGCCCATCTCATCAAATGCATGCATTTCCAGCACAGAATG
Seq A exon
GTAAGTGTAAATTTATTGTGGATCTAAGGAAAGTAGGATGAACTTTTCATTACTTTTTTCATAATAAGTGAATAATAAGTGGTCACCAGTTATATGAAGATGTAGAAAAGGAATAACAGGTTATTTTAGAGGAGCATAAAGAATCCTGTTCAATGTTCAACTTGAATTTGCTCTAACATCTTTAGTACAGAATTTAATGATAAAATTTAAGTATATGATGATATCTATTGATTTAAAGCCATGGTATTCAATAGAGATACAGATTTTTTTCATTCAGATTGGTCTTAAGAATAGCAAGGCTTAAAATTTAAGTGTTTCTAATGTGGGCTTCAGACTAAGCTTTTAGACAAACCTTTAATCTTACATGTAATGTAATTCAACAGGTAAATAAGCTTCTTTTTGTCTTTTTTCTTTTCTAG
Seq C2 exon
CTCCTACTACTGATTCCTTGAACAGCAGTAAGAGCCCTCATCTAGGAAACAGCTTTTTACCTGATAATTCTCTTCCTGTATTAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074:ENSBTAT00000061645:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=NA C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATGCTGAAGTCATTACATCA
R:
AGGAAGAGAATTATCAGGTAAAAAGC
Band lengths:
262-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development