RnoINT0092925 @ rn6
Intron Retention
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84972068-84972706:+
Coord C1 exon
chr17:84972068-84972256
Coord A exon
chr17:84972257-84972617
Coord C2 exon
chr17:84972618-84972706
Length
361 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTATCTTTTCCTGTTTCTAGCTC
3' ss Score
9.82
Exon sequences
Seq C1 exon
TTTTAGGAATGTTAAAGTCATTACATCAACTTCAAGTTGAAAATCGAAGATTAGAAGAACAGATTAAAAACTTGACTGCCAAAAAAGAACGTCTTCAGTTGTTGAACGCACAGCTTTCAGTGCCTTTCCCAGCAATAACGACAAACCCTAGTCCATCTCATCAGATACACACATACACAGCACAGACTG
Seq A exon
GTGAGTACAAGAATACTTTGTTTCTAAGGACCATGGATGGACTCTTACTGTCATGTACACAGAGAACAGTACCTGGCCACCATTTCCGTGAAGAAGCAGCTACTTCTAAGGGGCAGAGACAGCCTAACAAGTCCCTTGAGTTTTCTTTTACTTCAATGGATAGTTTAATGATAAAATCCTTTAGATGCAAGATTTCATTACTGAAATAAAGCTACAACATTCAGTACAAAGACACCACCTTCTCCCCCACCCCCATTTAAGTAAGTGTTAGGAGTAACAGAGCTGTGGGCTTCAGCATCCTCTTAATCCCACACATGATGCAACTAACAGGGTCCCTGTTTCTATCTTTTCCTGTTTCTAG
Seq C2 exon
CTCCTACTACTGACTCTCTGAACAGCAGTAAGAGCCCGCATATAGGAAACAGCTTTGTACCCGACAATTCTCTTCCTGTATTAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249:ENSRNOT00000034157:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAACAGATTAAAAACTTGACTGC
R:
ATTTAATACAGGAAGAGAATTGTCGG
Band lengths:
222-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]