GgaINT0102646 @ galGal4
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17812835-17813517:-
Coord C1 exon
chr2:17813329-17813517
Coord A exon
chr2:17812924-17813328
Coord C2 exon
chr2:17812835-17812923
Length
405 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTGCAATAATTGCATTAGCAC
3' ss Score
0.83
Exon sequences
Seq C1 exon
TTTTAGGAATGCTTAAATCATTGCACCAACTTCAGGTTGAAAACAGGAGGTTGGAAGAGCAGATCAAGAATCTGACTGCTAAAAAGGAACGGCTTCAGCTTCTCAATGCACAGCTTTCGGTGCCCTTTCCAACACTGACTTCAAATCCCAGCCCTTCTCATCAAGTACATGCCTTTCCTGTGCAAGCAG
Seq A exon
GTAAGTGGAGTATGGAAGTGTGGAAGCGATTAGGATGATTTATACGAAATAATGGCACATGCCATTGATGGAAGGTATTATGAGAATAGAAAAAGTACTTCTTGATGTGGGGATTAAAAAATATCTCGGATGTTTAAAATCAATTGGAAAACATGTATAAGTTACTTGTTTCAGCACAGTTTTTTTCTTTTTGTTTTTCAGACTGAAGTAGTCTGAAGCACATCTGCTTGAATCTATTGATTCACCAATCATGTAGTTAATGTTTTACCGTTCAGCAGTGATTCTGAGGTTGACTCTACATTTTTTTGTGTCTGCCTCTGGCATTATTTTGAAATAATTATTCTGAATCTCTTTACATGCTACAGAAATTTAATCGCTGTATGTTTTTTGCAATAATTGCATTAG
Seq C2 exon
CACCTAGCACGGATTCCTTGAACAGCAGTAAAAGCCCTCATCTGGGAAACAGTTTTTTACCGGACAATTCTCTTCCCGTGTTAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAGGAATGCTTAAATCATTGCAC
R:
CTGATTTAACACGGGAAGAGAATTGT
Band lengths:
278-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]