BtaINT0094535 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36616513-36619804:-
Coord C1 exon
chr12:36619547-36619804
Coord A exon
chr12:36616639-36619546
Coord C2 exon
chr12:36616513-36616638
Length
2908 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AAGGCTCTTCTGTGTCGCAGATG
3' ss Score
7.62
Exon sequences
Seq C1 exon
CATTTAAGGAAATTAGAAATGCGTTTGATTTGTTTAAATTAACTCCAGAAGAAAAAAATGATTTTCCTGAGAATAATCGGAAGAGAGATGAAATACCGCCAGACTATAAAGTCACAGAAGACCACAAAGCCAAGGAAAACAAGCCGTTACTTAAAGAAAGAAGAAATACAAGAGATGAGACTGACACGTGGGCATATATAGCTGCAGAAGGTGACCAAGAAGTTCTGGACAGCGCGATCCGAGTGGAGGAGAGTCCTG
Seq A exon
GTGAGTTTGTGTGACTGTCTGCAGTTTTCTCAGGGCTGTGTGCAGAGCTCTCTCCTCACCTTCCTCTCCTCTCTGCACTTGTTATGGTCTCGGGATGGAGTAGAAAACTGTTTCAATCTATTTTCTGATTCCCTGTAGAATAGCTCAGCACATTTACAATTACAGAGATTTTTGGTTTGCTACCTTATCTCCTCTTGTCAAGTTGTCTGATTGTATCTCTTACTATATTGCTTTCAGAAAACTGTCAAAATACAGACTTATTTGTATTCTTCCCTTTCAGCTTTGTAGTAAATAACACTAAATGAGGTTATATTGTGAGTGCTGTTCTGAAATACTGGAATTAGCTGAGGAGGCAAGGGCTGTGTATAGAATGAGGAATAAAAGTATATTTATGTATTTATAACTAGGGCAGGGGTTTAGAGATTTGTCTGATAAAACTTTGTATAATTTATAAATCTTGTAAAACAGTTGAAGTTTTGAAATATTTGGGGATATATAACAAGCTAGATGTTAGGTGACCCTCTTACTGCAAAACGCCTAGGTTCTGGGATCCTTGGTAACACGATTGCCCAGCTGGTTGGAAGCTGGGTTCGTTTCTTCAGCCAGCATACGGTGGGGGTTGCAGGGGCCGGGAGGGGACTGGGCTGCCCAGATGTCAGATAGCAGCGCTGCTGTTGAGATACCAGGCAACAAAGAATAGTCCCTCATCAGAAAGATCCCCTGGAGAAGGCAATGACAGCCGATTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCACGGGATCATAACAATCAGACATGACTTAGTGACTTACCAGCAACAAATACCTTTTTAGGGGTGGGGCTACTATACATATATGTTTGTATGTAAGCCACATCTTTGTTTTCAGAGGACAAAGGTGTGCAATTAAAAGTCAGAGACAGAGTCTGTCATACAGAGTGAAGTTAATCAGAAAGAGAAAAACAAATATTGTATATTAGTGCCTATTCGTGGAATCTAGAAAAATGGTATGCTGGTGCTAAGTCACTTCAGTCATGTTTGATTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTGCAGTGCATGGAAGTGAAAAGTGAAAGTGAAGCCGCTCAGTCGTGTCCAACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTGTTTCTGTGTTGGGATGTCCTTAAATCCTTTTAACTTTTTTTTTCTCGAAGTATAGTTGATACACAGTGTTGTTAAAGTGTACAGCAAAGTGATTCAGTTACACATACACACATATATTCTTCTTCCGATTGTTTTCCATTATAAGTTATTACATGATACGGAATATAGCTCCTTGTGCTATACAGTAGGTCTTTGTTTATGTTATGTATAGGAGTTTGTATCTTTTAATCCCAAACTGCTAATTTAGTCCCCTCTCCTTTCCCCTTTGGTAACCATTAGTTTGTTATCTGTGAGTCTGTTTCTGTTTTGTCAGTAAATTCATTTGCATCTTTTTTTTTAGATTCCATATGATATTTGTCTTTTTTGTGTCTGACTCACTTCACTTAATATGGTCATCTCCTGGTCCATCCGTGTTGCTGCAGATGGCATGATTTCACTCTTTTATGGCTGACTAGTATTCCTTTGGATATGTATATACATACACATATGTGTACACACACACCACATTTTCTTTATACATTCATCTATCGATGGACATTTTGGATATTTAAGTTGCTTCCATGTCTTGACTGTTGTAAATAGTGCTGCTGTGAACATAGGGCTCCATGTATCTTTTTAAATTAGTTTTCATCTTTTCTAGATATATGCCAGGAGTAGGATTGCTAGGTCATATAGTAGTTCTGTTTTTAGATTTTTGAGAAACCTCCATATTGTTCTCCATAGTGGCTATATCAACTTACATTCCCAGTTTGTAGAAGGGTTCCCTTTTCTCCATGCCTTCTCCAGCATTTATTGTTCGTAGATTTGTTTTAATGATGGCCTTTCTAACTGATGGGAGGTACTGGCTGTCGCTTTGATTTGCTTTTCTCTAATAATTAGCAATGTTGAGCATCTTTTCCTGTTAGTCATCTGTTTAAATCCTTTAACTCTTACCATCAAACATTTGTGCCTTTCACTATTTAAAATAGTACAGCCATTTTGAGTTCTTCCCAAATGTCCTCTATTCCACTGCCAGTTAGGGAATAAAGATGTTCATCCCTAGTGTTGATGAGTCCATGGGTCGGACATGGGTTGGAAACTAGCACTTGCATCGTTTGTAGTGGGGGCGTCTCAGGGCCCTGGTGGCTGTGGGGCTTGGTGCGAGTACTTGCAGGGGGAGAAGCTTGAGCCAAGTCTGACAGGATCACAGGCAATGACTTATTTATATTTAGAGTTTACCTACATGAATATTGGAAGCAGTGTACATTCATCCCTTGTGTAACGTTAACCCTCTATCTCTGGCCCTTCTGGTTGCGGGGGGCTGACCAGCTGTCCAAGAAGAATGGCCAAAGGAACAAATCACAGGGCTTCCTCTTACTGAAGCCCTGTGATTTCTCGCTTTCTTTCAGCTACTAAAATTCATGTTCCTATTTTACAGTTAATAAAATACCTATTAGTCTTTATGCCTCTTCATGTATGACATCTAAAAGTGGACAATTCATATTACTACCCAAAGAAAGTCAGAAATTTAATGAGAAACTCAGATAATGATGTAAGTTTAAAGTGTAACATTTGGGTTAGGACACCATATGCTTAAATAAAAATGGCATTGTATTTTTTATAGTCCATAAAAGTATATCTTAATAAGGCTCTTCTGTGTCGCAG
Seq C2 exon
ATGGCAAACAGCAGGTTCTGAGTCTGGGCATGGATCTGCAGCTGGAGTGGATGAGACTGGAGGACTTCCAGAAGCATCTTGATGGAGAAGATGAGAATGTTACTACAGCGGATGTGATTCCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922:ENSBTAT00000061268:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=NA C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development