DreINT0097307 @ danRer10
Intron Retention
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21662059-21665626:-
Coord C1 exon
chr9:21665147-21665626
Coord A exon
chr9:21662182-21665146
Coord C2 exon
chr9:21662059-21662181
Length
2965 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
TGTGTCTCTTTGTGTGACAGACA
3' ss Score
9.33
Exon sequences
Seq C1 exon
TGCCACGATCCAGTCAGAGTCCCATCTCCATGGAGGTTGATGAGAAACAGGAGAAGGGATCATCAGAGTTAGAAAAAAGTGAAAAATCAGATGAGCCGAACTTCAAATCTAAGGAGGAATTGCAACGGGAGCAGAGAGAAGAGGAGCAAAGGAAGAGGAAAGAGAAGATGGAAGAAGAAGAGAGAAAAAGGAAAGAAAGGATCGAAGAAGAAGAGAGAAAGAAGAAAGAAAGAATAGAGGAAGCACAGCGGGAGAGAAAAGCACGCCTGGAGGAGGCACAGAGATTTGCAGAGGAGGCCCGGCAAGAGCTAGAAAGGAAGTCTATGGCTGAGTCAATCGTGTCTCCAGACTCTACAGAAGACTCCAGGTGGAAGGACAAGAGGAGGAAAAGGAGGGATGACAGTGAATCACGGGTTTTCACCACCTGCGATGACAATCAGGACTCTCAGGAGACTGTGGAACGCTCAGACAAAACTCCTG
Seq A exon
GTTTGTACTTGGCCTGTCAATTAAAAGTTAAATCAACTTTTAAAATCATGCCTTGAGGCACCATCATTCTGTTAACTTACTCTAGAGCTACACAAGTGATGAAACTGAAATCACAGTGTGGCTTAGTTCCATTTTGCAAACTAATGTGACCATGGACTGGGGCTGCACAATATATCGTTTTAGCATCGATACTGCTATGTGCAAGTCTGCAATAGTCACATCGCAGGGATCTGCAATGTTGTCTGGATTATAGTTGACCAGACATTACAGTTAGCAACATAGTGAAGTCCTTTCAACATTAGAGCAAAAGTTTATTATTTGCACATGTTTTTAAGGCCTGTGACTGGAATGATTTGAAGCAAATTAAGCCATTTTGGGCACAAAAAATTAAATGTAGATTAATTGTATACTATACAATTATTTACTCAAAACAAAACAGTGTTATAATAATACTTTAAAACAGGTGAGTAAACGTTCCTTTTAGAGTTATTAGTTTACTTTATTTTTAAAAGAATTGGGTAAATCTGTTGATATTAAATCAATTATTTGATTATTTTAGTTATTATTATTGTTGTTATTATTATACAGTAATTATTTAATTTCTGTCTCTGAATAGTTTTTACTCCCCAGAAAATCATAAATCATTCTTTATTTGCATCTTATCTCTCTTGTATTAAACATTGCTTGGCAGTTTTTGATTATATTTTATTCAGATATGCTCTCCTATAGAACCATCTCAATCGATATAAATTATGAATTCTATACAAGCTATTCAAGTCATCTGGTGAAATTGCATTTATATTGTTATATATATATATATATGTGTGTGTGTATGTATGTATGTATGTATGTATGTATGTATATATATATATATGTATATATATATATGTATATATGTATATATATATATATGTGTATATATATATATATGTATATATATATATATATATGTATGTATATATATATATATATGTATATATATATATATGTATATAAATATATATATGTATATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTCACAGCCAATGAAAATATCGTTTACAATATTTTACAATATTGTGCAGTCCTACCATGGACCACAAAACCAGTCATACATATTTACTTATCTGAATCTGAAAGCTGAATAAATAAGCTTTACATTAATGCTTGCTTTTAATGGAGCAATACTTGACTGATTTCAATATATGGGCTCTGAGGGCTCAATAAAATCTAAATATTGGGAATATCTGCCTAAATGAAGTTCTTAGCAATGCGTATTACTAATCAAAAATTGTGTTTTGATATATTTGCAGAAGTAAATTTACAAAAAAAATATTCATGGAACATGATCTTTACACAACTCTTTGCGAGATGCTAATCGTCTAATCTGATTCAGTGATCTATGCTAAGCTAAGCTAAAGGTGCTCCCTCCAGACCTAGATATCAGCTAAATGGATTAAAAAATAGTAAAACTCTTAACTCTATGGAAAATGAGTCTATTGTCAAAAAAACTCAGTGTTCCTTTATTATTCTAATGATTTTTGCCATAAGAAATATCAATAATTTTGATCCTTAAAATAGGAATTGTTGTGCAGGGTCAAACACGTACGTACGTACGTACATGCATACATACAAATATATAGGTTAGGGTTAGGGGTAGCGCTAACCCTATATGTTTAGAATCCTTTTTCTAAATTCTTGTTTATTATACTGCAATATTATTATTTATATATAGTAATAATAATGACAAAATCTAGTTTGAATAAATATTAATAGGCATATCATCTTTTTAGATCAAATTCACAATTGTTTTAGAAACACTGCTATTTGTCCTCCTTTTGATCTTATTGTACTAGTTTGGACTTTATTTAGCTATAGCACATCTTGTGTGATCCATAAACATTTTTATTATTATATAATATTAGGTAAACATTATGTATTCTAATTATTATTATTATAAATTTATTAGTAACCATCATGATGATTCTTTTTTCTGATTTTTAATAACATTTTGGTCATTAAAACAAGAATTTTGAAAAAAAAAAAAAAAAAGACAAATTATCTTAACTCCAACAGAGCCCTACACCCACTGCACCATTTCTTTACAATATATTATGCAGATTTTTAATTTGTTTTACATCATGTCATGATATATACATGCATACATACAATACAAGTAGATAAAAGTTCTCTTTTATGTTCACTCATCTATTGTACATATATATATATATATATACACACACACACACAATGAATCACAGTAGACAAATATAAAATAAAGAAATAAAATAATATAGTTAGAAATTAAAATAAGATAAAACGGAGGTAGGAAAAAAATGTGAGAAGCAAATAAACAACGGTCAAAATGCAAATATTAAGTTTGGATCCATTTGCTTTATATATGTCAGCACTAGCTGCCAAATAAGCTAAAATGTTTAGATTCGACTATCGAATCAAGATGGTACAAAAGATTCCTTATCCATTGATTTAAAGGTTGGAGGAAATCCACTTGAGCAGTATAAGATGTATAGCAAATAACGTTGAAAGTGAAGTCATACTTTTGGTATTATTGTCTAAACTGGGATCTGTAATTAAACCAAAAATTCCTATAATAAGGCAAGGGTCAATTGATACATGCTAAATATTTTAAAAGAAATTAAATAATTATCGCCTTAACTTGCTAAGTTAGCACATGACCAAAACGTGTGTGTGATTAGCTCTCTCTACTTCACATCTATTACATAAGGGATTTATTGTTGGTGAAAATTTTGCTAACTTTGCCTTTGTCCAGTGTAGGTGATAGACCATTTTACTATCATGGTGATTTCTAATATAGCAGGCATCTCAATATGTTTTTGAGAAACATCCCTGAAAACCAGTAACTGTGTGTCTCTTTGTGTGACAG
Seq C2 exon
ACAGGGGACCACCATCCCTTAATCTTGGCGTTGAGCTCAAGCTAGACTGGATGACACTGGAGGACTTTCAGAAACACTTGAATGGAGAGGATGAAAATCTCTCTCCGCTAGCCTTAACACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576:ENSDART00000080404:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]