GgaINT0112890 @ galGal3
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183536037-183536831:-
Coord C1 exon
chr1:183536586-183536831
Coord A exon
chr1:183536163-183536585
Coord C2 exon
chr1:183536037-183536162
Length
423 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTCTTCTATAAATATGATAGATG
3' ss Score
3.97
Exon sequences
Seq C1 exon
GCTACAAGGACATCAAAAGTGCACTTGACATGTTTAATGTAGCTTCAGAAGAAAAAAAGGAATACTCTGAGAATAACTGCAAAAGAGAAGAACCCTCGCTAGAATATAAATTCATAGAAGAATTAAAATTAAAAGACAGCAAAGTGCACAAGGAGAGGAGGATAAAAGATGAAGCAGAAACATGGAATTACGTTGCTGCAGGAGGTGGTCGAGAAGTAGTGGATGTGTGTCACATGGAGAACTCTG
Seq A exon
GTGAGCTGTAGAACCAAATCTAGGACAAAGATGAGCGCTTCCATTTAATACTAACTCCATTCCTGCTTGCATCTTTTAATGCTCCAGTTCTTACTACCCCAGGAGGCTGAACCTGAAACTCATTGCTAATTTTTCAGCCTATCAGTGTGCCCGGTATATTTCTGCTGTTATAGTTCTGGAGTGTTTGCCATCTCTGATAGCTTCAGCCTAATGTCGTGGAACAAACAAGTTTCTTCTTTTGAGTAAAAGCCTTTTTTGTCTGCTTGCAACACAGCTTTCATTGTTTGGAATCATTTCACGTTGGCTTCCAAATGTTTGAAAAGTAGTATGTTGTGCTGATGATTGCTGAAGTAATGGCAAGCAGAGAGTGATTTGGGTCTGAGCTGTTACTTATTTTATTGTTTTCTTCTATAAATATGATAG
Seq C2 exon
ATGGCAAACAACAAGTCTTGAGTTTGGGTATGGACATGCAGTTAGAATGGCTAACGCTAGAAGACTTTCAGAAACATCTCGATGGAGAAGATGAGAATCACATCTCAGCAGAACCGATATCCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCAAAAGTGCACTTGACA
R:
TCGGTTCTGCTGAGATGTGAT
Band lengths:
356-779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]