HsaINT0104637 @ hg38
Intron Retention
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr13:19650003-19659120:+
Coord C1 exon
chr13:19650003-19650260
Coord A exon
chr13:19650261-19658994
Coord C2 exon
chr13:19658995-19659120
Length
8734 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAGGCTATTGTGTGTTCCAGATG
3' ss Score
7.32
Exon sequences
Seq C1 exon
CACTTAAGGAAATCAGAAATGCATTTGATTTATTTAAATTAACTCCAGAAGAAAAAAATGATGTTTCTGAGAATAATCGGAAAAGGGAAGAAATACCACTGGATTTTAAAACCATAGACGATCACAAAACCAAGGAAAACAAACAGTCACTTAAAGAAAGGAGAAACACCAGAGACGAAACGGATACTTGGGCATACATTGCTGCAGAAGGTGATCAGGAGGTTTTAGACAGCGTGTGCCAAGCAGATGAGAATTCAG
Seq A exon
GTGAGTTTGGAATCATTTTGCAGAATTTTTCAAGGTAGTGCACCATATTATTTTACTGTACTCTTCTCTGTATTTCTGATCTCAACGATCAAAAAATAATGGAGTCGAAGAGTTTATTTGGATCTCCTGAATAAATAACATTTTATATTGAAGACGGGTCATTCTGTGACTTCTCAATGGATCAAACAATTTTTCTGAGTTCCTATAATGTTCTCAGCACGTATAGAAATTAAAAGATTTCTGATTTTCTACCTTACCTACTCTTACCTGGCAGCCCCATTTTATATCTTACTATTTAATAGATTTCTTTCAGGAAATTATCAAATATAAACTTATTTGTATTTTACCCTTTTAATGTTGTAGCAAGTAACACTAAATAAGATTATATTATAAATGCTGTCCTGAGGACATTGGAGCTGGTCAAGAAGAAGAATACAGACTACAGTAGTGGTGGGGAGGAGGAGTGCTAAAAAGTGTACATACATGTTTATAACTAGGACCTAATAAATCAGAGAGGTTAGTCTAATAAAACTTTGTATAATTTGTGAATCTTGAGAAACAGTTGAGAATTGAAAAATTCGGAATATATGACAGACTAGATCGCCTGGGAAACCCTTATACTACAAAAATGACTATATCTTGGATACCGAGGGAAAATGTGCTTTTGGATATATTGCTGAGCTTGCAGGAAATTAGGGTAATTTCTGGTACCAGTGGGCAAGGAGGAAGAGGTATGTCGCCCAGAGGGCAGATGCCAAATAGTAACACTGCTGTTGAGATACCAGGCAGTAAAAAACAGATACAGTAGGGGAACATCAGTAAAGCCAGAAGTGGATTCCTGGTTTTCTATAAAATAAGCCTCTGACACAGTTTGTTGAGAACAAAAGAAACACATGAAAAAGAGGTACGATTACAGGTTGTGTACAGATTTAAAAGATGAAAGAATTCTATGAGCAATTTCTTACCAGTTGATTTGAAAACTAGCTAGGCGGCCAGGCACAGTGGCCTGTAGTCCCAGCACTTTGGGAGGTTGAGGCAGGTGGATTGCCTGAGCTCAGGAGTTGGAGACCAGCCTGGGCGACACAGTGAAACCCCATCTCTACTAAAATACAAAAACTTAGCTGGGCGTGGCAGTGTGCACCTGTATTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAAATCACACCACAGCACTCCAGCTTGGGTGACACAGTGAGACTCCACCTCCAAAAAAAAAAAAAAGAAAACTGGCTAGGCATGGTGGCATGTGCCTATAGTCACAGCTACTCTGGAGGCGAGGCAGGAGGATCAATAAGCCCAGGAGTTTGAGGCTATATTATGCTAAGATTGTACCTGTGAATAGCCACTGTACTCCATCCTGGTCAACATAGCAAGACTTCATCTCTAAAATTGAAAAAGAGGTTTGAAAACTGAATGACATGGGAAAATTCCTTGGGAAAAAAATAATGAGACTGATCCAAAAAAGACTGAATAGTCACAACTGTTAAAGAACATGAGGGCTGGGCACGGCGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACAAGGTCAGGAGTCCGAGACCAGCCTGGACAACATGCTGAAACCCTGTCTCTACTAAAAATACAAAAAAAAATTCGCTGGGCATGGTGGTGCGTGCCTGCAGTCCCAGCCACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGTGGTGAGCCAAGATCACGTCACTGCACCCCAGCCTGGGCAACAGTGCGAGTCTCCATCTCAAAATAAAAAAAGAACATGAAATACGGGATTGCTGGCAAGATGGCCGAATAGGAACAGCTCCGTTCCGCAATTCTCAGCGAGATTGACACAGAAAGCAGGTGATTTCTGCATTTCCAACTGAGGTACCCGGTTCATCTCATTGGGACTGGTTGGACAGTGGGTGCAGCCCACGGAGGGTGAGCCAAAGCAGGGTCGGGCGTTGCCTCACCTGGGAAATGCAGGGGGTCGGGGAACTCCCTCCCCTAGCCAAGGGAATCTCTGAGGGACTGTGCCATGAGGAACGGTGCACTCTGGCCCAGATACTGTGCTTTTCCCATGGTCTTCGCAACTCACAGACCAGGAGATTCCCTCTGGTGGCTATGCCGCCAGGGCCCTGGATTTGAAACACAAAACTGGGTGGCTGTTTGGGCCGACACTGAGCTAGCTGCAGAAGTTTTTTTTCCATACCCCAGTGGCACCTGGAACGCCAGCGAGACAAAACCGTTCATTCCTCTGGAAAGGGGGCTGAAGCCAGGGAGCCAAGTGGTCTGGCTTGGCGGGTCCCACCCCCACAGAGTTCAGCAAGCTAAGATCCACTGGCTTGAAATTCTCGCTGCCAGCACAGCAGTCTGAGATCAATCTGGGCCACTTGAGCTTGGTGGGAGGAGGGGTGTCCGCCATTGCTGAGGCTCGAGTAGGTCGTTTTACCCTCATAGTGTAAGCAAAGCCTCCGGGATGTTCGAACTGGGAGGAGCGCACCGTAGCTCAGCAAGGCTGCTGTGGCCAGACTGCCTCTAGATTCCTCCTCTCTGGGCAGGGCATCTCTGGAAAAAAGGCGGCAGCCACAGTCAGGGTCTTGTAGATAAAACCCCCATCTCCCTGGGACAGAGCAACTCGGGGAAGGGGCGGCTGTGGGCGCAGCTTCAGCAGACTTAAACGTCCCTGCCTCACGGCTCTGAAGAGAGCAGTGGATCTCCCAGCACAGCATTTGAGCTCTGCTAAGGGTCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCCATGTCTCCTGACTGGGAGATACCTCCCAGTAGGGGCCAACAGACGCCTCATACAGGAGAGCTCCGGCTGGCATCTGGCGGGTGCCCCTCTGGGACGAAGCTTCCAGAGGAAGGAACAGGCAGCAATCTTTGCTGTTCTGCAGCTTCCGCTGGTGATACCCAGGCAAACAGAGTCTGGAGTGAGCCTCCAGCAAACCTGCAGCAGAGGTGCCTGTTAGAAGGAAAACTAACAAACAGAAAGGAATAGCATCAACATTAACAAAAAGGATGTCCACTCACACCCCATCTGAAAGTCACCAACATCAAAGACCAAAGGTAGATAACTCCACAAAGATGGGGAGAAACCAGTGCAAAAAGTCTGAAAATTGCAAAAACCAGAACACCTCTTCTCCAAAGGATCACAACTCCTCGCCAAGGGAACAAAACTGGGCGGAGAATGAGTTTGACGAATTGACAGAAGTAGGCTTCAGAAGGTGGGTAATAAACTCCTCTGAGCTAAAAGAGCATGTTCTAACCCAATGCAAGGAAGCTAAGAACCTTGAGAAAAGGTTAGAGGAATTGCTGACTAGAATAACAAGTTTAGGGAAGAACAGAAATGACCTGATGGAGCTGAAAACACAGCACGAGAACTTCATGAAGCATACACAAGTATCAATAACGAAATCGGTAAGCAGAAGAAAGGATATCAGAGATTGAAGATCAACTTAATGAAATAAAGCAAGAAGACAAGATTAGAGGAAAAAGAATGAAAAGGAATGAACAAAGCCTCCAAGAAATATGGAACTATGTGCAAAGACCAAATCTACGTTTAATTAGTGTACGTGAAAGTGACGAGGAGGATGGAACCAAGTTGGAAAACACTCTTCAAAGTATTATCCAGGAGAACCTCCCCAACCTAGCAAGACAGGCCAACATTCAAATTCAGGAAATACAGAGAGCAGCATTAAGATACTCCTCAAGAAGAGCATCCCCAAGACGTAATCATCAGATTCACCAAGGTTGAAATGAGGGAAAAAATGTTAAGGGCAGTCAGAGAGAAAAGTCGGGTTACCCACAAAGGGAAGCCTGTCAGACTAACATCATTCTCAGCAAACTAACACAAGAACAGAAAACTAAACACACACTACATGTTCTCACTCATAAGTGGTAGTTGAACAAGGAGAACACATGGACCCAGGGAGGGGAACATCACACACCAGGGCCTGTCAGGGGGTAGGGGCTCCGGGAGGGATAGCATTAGGAGAAACACCTGATGTAGATGACAGGATGAGGGGTGCAGCAAACTGCCATGGCACGTGTATGCCTGTGTAACAGACCTGCATGCTCTGCACATGTACCCCAGAACTTATAGTAATAAAAAAAAGAACGTGGAATAATAAAAACAGCCTCATAAATTTAACGCCAAGTCAGATGGGTTTCTCAAACCAAAGGCTACCAAACTTATAAAAGTCGCTCTAAAAATAGACAAAGAATGCTAATGCTAACTTATTCTGGGAGACCATCATAACTTCAGTACCAAAACCAGACAAAAACTATATATAAGAAAAGGCCGGGCGCAGTGGCTCATGCCTGTATTCCCAGCACTTTGGGAGGCCGAGGCGGGTGAATCACCTGAGGTCGGGAGTTCGAGACCAGCCTTACCAACATGGAAAAACCCTCTCTCTACTAAAAATACAAAATTAGCTGGATGTGGTGGCACATGCCTGTAATCCCAGCTACTCAGGAAGTTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTTCAGTGAGCTGAGATGAAACCATTGCAATCCAGTCTGGGCAACAAGAACGACACACCATCTCAAAAAAAAAAAGAAAAATGACAGGCCAAGCTCACTAAACGAAGTCACACGCAAAATCCCCCACAAAATATTAGCAAATTTAATCTGGCCCTGTTTTAAAAAAAATCTCATGATCACGTTGGGTTTTTCCTACAAATTGTAAAGGAGAAATTGATTTAATAGCATTCTTGATTAAAAAGTAAAAACAAATTATGAATAAAGGGAGCTTTCTCGATTGATAAAGGACATTAAACCTTTAGCAACATAAGCCAGGCATGGTGGCTCACACCTACAATCTTAACACTTTGGGAGCTGAAATGAGAGGATCACTTGAGCCCAGGAGTTCAAGACTAGCCTGGGAAAACAAGACCCTGTCTGTACAAAAAATTAAAAAAGCTGGGTGTGGTACTATTTGCCTATAGCCTCAGCTACTTGGATGGCTGAGACAGGAGGACCACTTGAGCCCGGAAGTTCGAGGATGCAGTGAGCCATGATAACACCACTGTACTCCAGCCTGGGTAACAGAGTGAGACTCTGTCTCAAAAACACCACCACCACCACCACCACCACCAAAAAACCCTTTAGCAGCATGAGTTATAATGGTGTAACATTAGAAACATTGATTTGATTTGATTTTTTATAGAGATGGGTTTCACCATGTTTCCCAGGCTGGTCTTGAACTCCTGGGTTCCAGTGATCCACTTGCCTCAGCCTCCCAGTGTGCTGGGACTACAGGCATGAGCCACCATGACTGGCCAGAAACATTGATTTTAAACCAGGAATAATACAAGGATGCCTTCTGTCAACACTTTTATTCAACATTATACTAAGGTCTACTCAGTACAGTAAGACAAAGAAATAAAAAAGCCATAGGCATTGGAAAGGAACGGGGAGGGGAAATAGCTGTCACCCAGGCGGGATGCCTCCCACCTATAATCCCAGTGCTTTGAGAGGCCAAGCAGATCGCTTGAGCTCAGAAGTTTTGAGACCAGCCTGGGCAACATGGTGAAACTCCACTTCTACAAAAAATACAAAATTAGGCGCATGCCTGTAATCCCAGCTATTTGGGAGGCTGAAGCAGGATAATCGCTTAAATCCGGGAAGGTGGAGGTTACAGTGAGACGAGATCGCGCCATTGTACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCTCAACAACAACGTAATAAAATAAAATAAAATAAACCAGGCAGGATGGCACATACCTGTAGTCCCAGCTACTCAGGAAGCTAAGGTAGGAGGACCATTTGAGCCCAGGAGGCAGAGATTGTAGTGAGCTAAAATCGTGCCACTGCACTTCAGCCTGGACGACAGAGCAAGACTGTTGTCAAAAAAAAAAAAAAAAAAAAAAACTGTCGTCATCAGATTCATATTAAAAACCTAAAATCTACAAATAAATTATTAGAAGTATTAAAAATGTAGCAAGGTGACTGGATATAAGATCAGTGACAAAAGCCAATTTTCTTTTTTAAACCTATATACATTTCTACATAAATAATAAATGTATTTTTTAAAAGATACAGTTTTCAGGCCGGGCGCGGTGGCTCACACCTATAATCCCAGCACCTTGGGAGGCCGAGGCGGGTGGCTCATTTGAGGTCAGGATTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTAGGCGTGGTGGCACATGTCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTCAACCGGGAAGGCGGAGGTTGCAGTGAGCTGAGATCGTGCCATCGCACTCCAGCCTGGGGGACAAGAGTGAGACTTTCTTTCAAAAATAAAAAATAAAAACATACAGTTTTCAATAGCAACACATTAAAAGATTTAAAAGATTGCTTAGAATATTGTTCATAAAAGATGGGCCAGGCACGGTGGCTCACGCCTGTAATCCTGGGAGACTGTGGAGGGTGGATCACTTGAGGTCAGGAGTTCGAGGCCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGTTGTGGTGGCATACGCCTGTGGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATAGTGCCACTGCACTCCAGCCTGGGCAACAGCACAAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAGGCCTGTATGGAGAAAATTTTAAAGATTTCTTGATTGCTTGAAAGTTACTAAAATGTATATATGCCATTTTTATTAGAAAACAGTTTTAGGGTCCAGGCACGGTGGTTCACGCCTGTAATCCTAGCAGTTTGGGAGGCTGAGGCAGGCAGATCATTTGAGGTCAGAAGTTCGAGACCAGCCTGGCTAACATGGTGAAACCCCATCTCTACTACAAAATACAAAAATTAGCCAGGCAGAATTTTTTTTGCATGAGCAAAAAAATAGCTTTTTTTTTTTTGCGCTTGAGCAAAACATAGCTCATGCAATTTCAGCTACTCAGGAGGCCAAGGCACAGAAATCACATGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGGACAGAGCAAGACTCCGTCTCAAAAAAAAAAGAAAAGAAAATCAAGCATATCAGGTCCAGAGGCAAGACCCACACTTGTCAGGAATGAACATGGGTTTTGAACCAGTTTGCTTTGTTAGAGACCACAATCTGAGCTGCAGCTCAGCCTTTCCAGTGGTTCTGGTCTAGGCATGCTCTCTGTTCTTACAGCAGTCCTGTGAGTTTGGTGGTATTATCTCAGTTCATAAAGACCTCATCTGTTCTGCTTCCACAATCTTTCCACATTGCTTCCTCAGTGGTGGGATGGGTCATGGGGCATAGCAGGTGGGGGCTTCATGGGGGACTCAGACACCTGAATAAGAAGACTGGCTCTGCCACTCACTGCTGTGTGTCTCTGAGCAAACCCTGGAGCCTCTCCCAGCCTCTCTCATCTGTAACATGTCTCCCCTTACAGGTTATTGTGTATGGAGGAAATAAATCCATTCATGTAAATAAGTTAACATGTCTTATGATTGCTAGTGGCTTTCACTATTACCATTGCTGATAGACCTGGGATGCTGCACCAGGATGGACAGCCCAGAGGCTGTGCTGTTTCTCTGCTGTCAGCTCTCAGAGTTAGCAGAAGTGTTAGTTTGAGTTGAGGGCTTTGGAAAAGTTCTTCATTTATTGCATATGTTTTACAAACTTTTTTTCTGTGGCCAGGCCATCTGCCTAACATCATCTATATAGTTTGAGGAACTGGTTTCAGGTGAAAATCCTTTAACTCTACCATCAAGTAGTTCTGTTTTTCACTTGTAAAAAAAGCACAAAACCATTGTGAATTACTCCCAAATGACCTGCACTGAAGTCTGTGTGATTGATTGCAGTGGTGATAAAGGCTGAACACATGCGTCCTCAGTGTTCCCGTGCCTGTAGGTCCTGTCGGGGAAGACTCTAGCAATACCTCACGGGGGTGGGTGTGGGCCAGGGCACTGGGAGCAGGAGGCTTCCAGATGTAGGGGCCTGTGGGAGTCTGGAAGGATCCATAAGCAGTGCCTTTGACTCACATGCTGGGATAGCTCACATGCTGAGAATGGCTTTATCTGTACATGGTTGGAAGCAGTGTATGTCCAAGAAGAATGGTGTAAGGGAGAAGAGTCACATTAGAATTGCATTTCCTCTTACCAGATCCCCGATCCCTCCTTCCTTTGAGCTACTTAGTCTTAAAATTCCTCCTTTGCTATTTTACAATGACAGCTTACCTATTTATCTTTATGCCTTCAGAGTACCATGGCTTCTAAATGTGGATCGTTCATATTACTTCCCAAAGAAAATTGGGGATTTTATCAATTAAAAGACCCCATTATACAATGACTTGTGTTAAAAGTGTACATAAAGCTTTGGTTAAGACACCACAAATTTCATAAACAACATTGTGGGTTTTTTATACTTCAGACAAATGTATGTTAACAAGGCTATTGTGTGTTCCAG
Seq C2 exon
ATGGCAGGCAGCAGATTCTGAGTTTGGGCATGGACCTGCAGTTGGAATGGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAAGATGAGAATTTTGCTGCAACAGATGCAATTCCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199:ENST00000361479:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=NA C2=0.262
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development