BtaINT0095644 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51081705-51082043:+
Coord C1 exon
chr22:51081705-51081852
Coord A exon
chr22:51081853-51081930
Coord C2 exon
chr22:51081931-51082043
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTGTGCCTCTTCTTCCCAGGGC
3' ss Score
10.28
Exon sequences
Seq C1 exon
GGCAGCGCTCGCCCTTGAATGACTTCCAGGTGCTTCGGGGTACGGAGCTGCAACACCTGCTACACTCAGTGGGGCCTGGGCCTTGGCAAGAAGATGTGGCAAATGCTGAGGAATGTGCAGGCCTCTGTGGGCCCCTCCTGGACTGCAG
Seq A exon
GTGAGTGGCCACTGGACCTAGATAAGACTGGAGGGAGAGGAACCTGGGCACTGGTGACCCTGTGCCTCTTCTTCCCAG
Seq C2 exon
GGCCTTCCACTACAACTTGAGCAGCCATGGTTGCCAGTTGCTGCCATGGACCCAGCACTCACCTCATACACGACTGCAGCGTTCCGGGCGCTGTGACCTCTTCCAAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(51.8=86.0)
A:
NA
C2:
PF0002421=PAN_1=FE(45.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTTGAATGACTTCCAGG
R:
AACCATGGCTGCTCAAGTTGT
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]