HsaINT1023634 @ hg38
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49687556-49687897:-
Coord C1 exon
chr3:49687750-49687897
Coord A exon
chr3:49687669-49687749
Coord C2 exon
chr3:49687556-49687668
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTGTGCCTTCTTCTCTCCAGGGC
3' ss Score
11.71
Exon sequences
Seq C1 exon
GGCAGCGCTCGCCATTGAATGACTTCCAAGTGCTCCGGGGCACAGAGCTACAGCACCTGCTACATGCGGTGGTGCCCGGGCCTTGGCAGGAGGATGTGGCAGATGCTGAAGAGTGTGCTGGTCGCTGTGGGCCCTTAATGGACTGCCG
Seq A exon
GTGAGTGGCCACTGGGCCTAGATAAGACTGGGGGCAGGGAAGCCTGGGCTGTGGCGTTACCCTGTGCCTTCTTCTCTCCAG
Seq C2 exon
GGCCTTCCACTACAACGTGAGCAGCCATGGTTGCCAACTGCTGCCATGGACTCAACACTCGCCCCACACGAGGCTGCGGCGTTCTGGGCGCTGTGACCTCTTCCAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531:ENST00000449682:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(53.8=100)
A:
NA
C2:
PF0002421=PAN_1=FE(41.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCGCCATTGAATGACTTC
R:
ATGGCTGCTCACGTTGTAGTG
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains