RnoINT0094902 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116858408-116858746:+
Coord C1 exon
chr8:116858408-116858555
Coord A exon
chr8:116858556-116858633
Coord C2 exon
chr8:116858634-116858746
Length
78 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACCTCGCGTCTGCCCCCCAGAGC
3' ss Score
8.45
Exon sequences
Seq C1 exon
GGCAGCGCTCACCGCTGAATGACTTCCAGCTGCTTCGGGGCACAGAGTTAAGGAACCTGCTACATCCAGTGGTGCCAGGGCCATGGCAGGAGGATGTGGCAGATGCCGAGGAGTGTGCTAGACGCTGTGGGCCCCTTCTGGACTGCCG
Seq A exon
GTGAGTGGCTAAGTAGCCCAGACATGGCTGAGGGTTTGAGAATCTGCGTTGCCAGTTAACCTCGCGTCTGCCCCCCAG
Seq C2 exon
AGCCTTCCACTACAATATGAGCAGCCATGGTTGCCAGCTACTACCGTGGACTCAGCACTCTCTGCGTGCACAGCTACACCATTCTAGCCTGTGCGATCTCTTCCAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(52.1=100)
A:
NA
C2:
PF0002421=PAN_1=FE(40.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCACAGAGTTAAGGAAC
R:
TGAGTCCACGGTAGTAGCTGG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]