MmuINT0101362 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108081145-108081497:+
Coord C1 exon
chr9:108081145-108081292
Coord A exon
chr9:108081293-108081384
Coord C2 exon
chr9:108081385-108081497
Length
92 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ACCCCCCCCCCCTTCTCCAGGGC
3' ss Score
11.46
Exon sequences
Seq C1 exon
GGCAGCGCTCACCACTGAATGACTTCCAGCTGTTCCGGGGCACAGAGTTAAGGAACCTGTTACACACAGCGGTGCCGGGGCCATGGCAGGAGGATGTGGCAGATGCTGAGGAGTGTGCTAGGCGCTGTGGGCCCCTTCTGGACTGTCG
Seq A exon
GTGAGTGGCTAAGTAGCCTAGATATGGCTGAGGGCATGAGAATCTGGGTTGCCAGTTAACTTTGTGTCTGCCACCCCCCCCCCCTTCTCCAG
Seq C2 exon
GGCCTTCCACTACAACATGAGCAGCCATGGTTGCCAGCTGCTGCCGTGGACCCAGCACTCGCTGCACACACAGCTATACCACTCGAGTCTGTGCCATCTCTTCCAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(52.1=100)
A:
NA
C2:
PF0002421=PAN_1=FE(40.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTCACCACTGAATGACTT
R:
AACCATGGCTGCTCATGTTGT
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types