BtaINT0095650 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51083100-51083569:+
Coord C1 exon
chr22:51083100-51083268
Coord A exon
chr22:51083269-51083438
Coord C2 exon
chr22:51083439-51083569
Length
170 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TAAGCAGCGTGCCTGCTCAGAGA
3' ss Score
0.2
Exon sequences
Seq C1 exon
GGTCCGAGGCACAGCCGAGCCAGGAAGCCACGACGCTCAACTGCTTCCGCGGGAAAGGCGAGGGCTACCGGGGCACAGTCAACACCACCGCCGCAGGCGTGCCCTGCCAGCGTTGGGATGCACAGCTCCCACATCAGCATCGCTTTGCGCCGGAAAAGTATGCGTGCAA
Seq A exon
GTGAGTTGGCTGGCAGCCACTGGGAGCTGAGTACTCCTGGGGATGGGACCTGAGGGGGTGTCCCGGGCGGCGCTTGAAGGAAGGCGAGACCTGGGGAGAAGCTGAAGGCTGGACTGCGGCTTCTGCTGGCGGGCTGGGACCCACCTGGGCTAAGCAGCGTGCCTGCTCAG
Seq C2 exon
AGACCTTCGGGAGAACTTCTGTCGAAACCCCGACGGATCGGAGGCGCCCTGGTGCTTCACATCGCGGCCTGGCATGCGCATGGCCTTCTGTTACCAGATCCGGCGCTGCACCGACGACGTGCGGCCCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=73.7)
A:
NA
C2:
PF0005113=Kringle=PD(45.6=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCACGACGCTCAACTG
R:
TGGTAACAGAAGGCCATGCG
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]