MmuINT0101368 @ mm9
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:107984796-107985281:+
Coord C1 exon
chr9:107984796-107984991
Coord A exon
chr9:107984992-107985150
Coord C2 exon
chr9:107985151-107985281
Length
159 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
3' ss Seq
TAAGGGAAGTGACTACTCAGGGA
3' ss Score
-4.1
Exon sequences
Seq C1 exon
GGCCTAACCTGCCTCCGACCGTCAAAGGATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGCGTGCCCTGCCAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGTGCCAGAGAAATATGCTTGCAA
Seq A exon
GTGAGGTGACAGGCCGGAGCAGGGAGAGTGCACCTGTGGGTGGAGGCAGAGCGTATGCGAAGGTGGGACCTGGGGGCGGAGCCAGAGGTTCCAGCCTACTGCGGGTTGGCTGGTGGGCTAGGTGGGACCCCACTCTCGATAAGGGAAGTGACTACTCAG
Seq C2 exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGCATGGCCTTCTGCCACCAGATCCCACGCTGCACTGAAGAACTGGTGCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-Mst1:NM_008243:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=63.6)
A:
NA
C2:
PF0005113=Kringle=PD(45.6=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACCGTCAAAGGATCCAAG
R:
CAGGTCGAGATGTGAAGCACC
Band lengths:
253-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: