GgaINT0020668 @ galGal3
Intron Retention
Gene
ENSGALG00000002722 | E1C8A1_CHICK
Description
NA
Coordinates
chr12:2308023-2308284:+
Coord C1 exon
chr12:2308023-2308185
Coord A exon
chr12:2308186-2308255
Coord C2 exon
chr12:2308256-2308284
Length
70 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGG
5' ss Score
3.87
3' ss Seq
CCACGTGGCCCCTCCGCCAGGGA
3' ss Score
5.12
Exon sequences
Seq C1 exon
AGAAACGCCCGCGGCCCATCAACGTCACCACCGGCTGCTACAGGGGCAAGGGCGAAGGCTACCGGGGCCGGGTGAACGTCACCGTGTCGGGCATCCCCTGCCAGCGCTGGGACGCGCAGACACCCCACCGGCACCACTTCGTGCCCAGCAAGTACCCCTGCAA
Seq A exon
GTAGGGCTGGTGGGACGGGGGGCTGCGGCAGCACCCAGGCGTGCGGGCACCCACGTGGCCCCTCCGCCAG
Seq C2 exon
GGACCTGCAGGAGAACTACTGCCGCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(73.7=76.4)
A:
NA
C2:
PF0005113=Kringle=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAACGTCACCACCGG
R:
GTTGCGGCAGTAGTTCTCCTG
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]