RnoINT0094908 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859713-116860188:+
Coord C1 exon
chr8:116859713-116859908
Coord A exon
chr8:116859909-116860057
Coord C2 exon
chr8:116860058-116860188
Length
149 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
3' ss Seq
TAAGGGAAGTGACTACTCAGGGA
3' ss Score
-4.1
Exon sequences
Seq C1 exon
GGCCCAACCTGCCACCGACCACCAAAGGATCCAAGTCACAACAGCGCAACAAGGTCAAGGCTTCGAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGTGTGCCCTGCCAGCGCTGGGATGCGCAGAATCCGCACCAGCACCGCTTTGTGCCGGAGAAATATGCTTGCAA
Seq A exon
GTGAGGTGACAGGACGTAGCAGGGAGAGTGCACCTGTGGGTGGAGGCAGAGTTTATGGGAAGGTGGACCTGGGGGCGGAGCCAGAGGTTTCTGCCTACTGCGGATTGGCTGGTGGGCTAGGTGGGACCCTAAGGGAAGTGACTACTCAG
Seq C2 exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGTGTGGCCTTTTGCTACCAGATCCCACGCTGCACAGAAGAAGTGGTGCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=63.6)
A:
NA
C2:
PF0005113=Kringle=PD(45.6=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACCACCAAAGGATCCAAG
R:
CAGGTCGAGATGTGAAGCACC
Band lengths:
253-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]