BtaINT0095739 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004073 | MTA3
Description
Bos taurus metastasis associated 1 family, member 3 (MTA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101964]
Coordinates
chr11:25139016-25140999:+
Coord C1 exon
chr11:25139016-25139090
Coord A exon
chr11:25139091-25140940
Coord C2 exon
chr11:25140941-25140999
Length
1850 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TCATCTATCTTTTCAATTAGAAA
3' ss Score
6.9
Exon sequences
Seq C1 exon
CTCCCTTGGAAATCACTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATATGTGCAGCAG
Seq A exon
GTAATTTTTCATGTTGCTACCAATAGAGTTGCATTAAAATGAGCTATTTACACATTAATATTTCTTAGCAGTATACTTTAAGTTTGTTTTGTTTGCTTTATCTTTTCTAGACCACTATAAACTATGTAATTTCATATCTTTAGCATATCATTTTAAGATTTTAGTCTCAATATTTTCTTTACTTTAGATTCCATTATGATAAATATTTTGAAAAGATTGCAGGGAAATATCCACCAGAGAGGTTTTATTTTCCTTGCACGTGCCTGGTGCTTCATCTCTTTGTTGGTATAGTTGATGGAAATGACTTCAGATGTGTAAGAGTTCTTCTAAAACCTCCTGGACATTTGTGTGATTATATCAAGTGTTTGACCTTAAGTGTAGCAGTTAGTCTTTGCTAGTTTAATGTCTTTACTATTTAAAGTTTACTGTACATAAATACAGAACTTTCCCCAAAAAATTATCTCTAAAAGCAGAGATTAACTTATTTTTTAAATCTTCCCCAAATGTCCCAAATTGAGGTAATTCTCTCAATTACTACTTTTGGAGGAAAAGTATATTTTCCTCAGGTGACCTAGTATATTATATTCTTCTAGATCCATGTCAGAACTGGTAGAGACAAAGGGGCAAATAAATTTAACAGGCATTTTTTCCCCTAAGTATATGATCACCCAATGGCAAGTGTTACATGCTGTAAAAATACAGTTTAAAGGATCACTAAAAAAATTACCCTAGTGAGTTGTTGAGGTTGTGAATAGTGAGCAGATACCCATGGCTTGTTGAAAAATGTCCAGTGTTATCATCATATATAATTCAGAAAATGCTTATTTCAAACTAGCATCCAAAACCAAGTAAGATGGTTCTCTAGAACATTTGTCTGCCATCTTCTCATCTGTTGTTGACTTTCCAAATAAAGTTTGCATGCACACCCCCCACCCCACCCCCAGGATCTGCTTAGGTAGATGTGAGGACCATGTGCTCTGGAAATCTGTGTCATTCAAAGTGAAAAGAGTTTCTAGAGATGGTGGCAATGATGGCATTGAGGATGGTTGAAATGTGTTTGAATTAAATTATTTCCAAGAATTTCAACTCCTTATTTAAAAGTTTTAAGTTGCCTCCTTAAATTTTTTTATTTCCTTCTCATTGAGAAAATGGAGGCTTCCCTTGTGTTCTGATTTGTTGTAATTTTGAATATCCACCATACATTATTTTCTTTCTCTGTTTGCATTTACTGTTGTGTTGATCAGTCTCTGGCTTTGATTATATAATCTTTTCACCATGCCTTTCCCTGCATTTGACTCCTAATTGGCACCTAAAAATCTGACGTGAGTTCAATCAAGCTTAAAGTTTACTGCACACCTCCCAAGATTCTGAGGGTAGATGCTTATTTAATTGGACTTAGTTACTGTCTCTTTCTTTTGCATAGACTTTGGAAAGTAATCATCTCTGAGTAATTTTCTAAAAGCAAAGATCATTGTTTGTTTTTTATCCCTTCCAGAAAGGCAAAAAAGAAATAAAATAGAAACTAAATGTGAAAAGTAAAAATGGTTACTTATAAGTTTGATTTATCTGCTCCTAGAGGAATGGGAAATGGAGTTGCTCATTACATTATTTTTAAAATTTGTGTCTAAAATGTTTATTTAATACCTGTTCTGTACCTCAGAATCTAGTGATTTTTCTTACAAATTTCTGCAGTTTAAGAACATGTGCATGAAAGAAAAACTCATCTTAAAAAGACAGTTTTTGAATTATATTTTAATGTTTTATTTTCTTGTGAATTTTTTAAGACAGATGAAGTGGTAATAATTATTTTGACATTGTGTGTAAAATATTTCATCTATCTTTTCAATTAG
Seq C2 exon
AAACGTCTAAAGGCAGCAGAAGCTGAGAGTAAACTGAAACAAGTGTATATCCCAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004073:ENSBTAT00000033090:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.040 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development