RnoINT0094989 @ rn6
Intron Retention
Gene
ENSRNOG00000004685 | Mta3
Description
metastasis associated 1 family, member 3 [Source:RGD Symbol;Acc:1306803]
Coordinates
chr6:6995655-6998623:+
Coord C1 exon
chr6:6995655-6995729
Coord A exon
chr6:6995730-6998564
Coord C2 exon
chr6:6998565-6998623
Length
2835 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTGTCTGTCTTTTGAATTAGAAG
3' ss Score
7.16
Exon sequences
Seq C1 exon
CTCCCATGGAAGTCCTTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATACGTTCAACAG
Seq A exon
GTAACTTCCTGTGCTACCCCACTATTGTATTACAGTGAGCCTTTCTGTTTGGGTCAATGTCTGTGAGCAAGGCAGGAATCCTGAGCCTGTTTGATTTTTCCTAGACTGCTTTAAATTCCATGACTTCATGTCTTTAAGATATTATCTTTAGGGCTGGAGAGATGGCTCAGCCGTTAAGGGCTAGGCTCACAACCAAATATATAAGATATTATCTTTAATATTTTCATCTTAATGGTTCATTGTTTTCAGTATTCATCTTTATAACTACTTGAGAAAGATGAAAGGGGAGAGAGGCAGCTAGAGAGGCATTGTCTGGCCAGTGCCTCCTCTCCAGCAAATGAGGCTTATGAGAAATCCTCAGACGATATACCTTTATGGATTGAAATTTGAGCCGGAGACCACCAGCCTTGTAAATTCAGATGCATGACATTTTGTGGGCCTGTTCTATAAGCTCTAACCCCCCCATCCCCTAGGGGGTCCCCTGTCCAGATGCCAGGGAGCTTACCTAGGACCTTGAGTATGATAGGTAGGTGAATTGCCACCGAACTACAAACCCAGGCCTCCCCTGAGCTTTTGACCTCAATGGTAACATGTTTGTTGTTAGTTTGAGACAGGGCATCCCTGGGTAGCCCAGGTTGTCCCTAAACTTGAGTTCTTCCTGCCTCAGCCTTCAAAGCATTAGGATTGCAGGTGTTTGCCAGCAGGCCTGGGGATGGTAGCTTTAGTCTCTGTCCTTCGATGCTTTCTTCTCCAAAGTCATTCAAAATCAGGGGATCATTTAATTTTGAGTTCTTCATAAATGTCCTAAATTCACATAACTCTTAGTTACTTATTTTGAAAACCCTACCTTTGGAGAAAGGCATATTTCTGAAATGACCTCAGTGAATGCCTGTTTTAGATTCTTGCAGTCACGTGTCGGAACCAAGGCAGAGATTAAAAACAGATGGCATTTGCCTAAATGTGCCAGCTGTACAGTGGCGAGGACTGGATGCCACACACACTCATTTAAGGATCCCTCTCAAGTGCCAGGCGTTGCCGTGGTCATGAATAGTGAACAGACATCCACAGCACACTGGACTGTTTCCAGTGTCAACACCGTATGGAACTCAGAAGTGCATATTTTAAACAACTGTGGAGGACATGAAGGCTGTGCCGTCTGGAAACCTGTTCTGTGCAAGTTAGGAAGTGTCCCCAAAGAAGGCACAGACATGGCACTAAGGACAGTTTACTGTGTTTGGAAAAATGTTTTCCGAAAGAGTTGACGCCATTCGAAGTCCCAGGTTGTCCTTGAATACTTTTGTCTTTATCTGTTGGACAACTGCAGGGGGCATTGTAGTCTCTCTGGGGAGAGCGACTGTACTTTATCCCCCATTCCTTTTGCATTTATTTCTGTGCTGGTCGTGGTGTAGACCCGATGACACGGTCACCTTCCCGTTCTCTGCCTGCACTTGGCTCCTAGTTGACTTCCTGTGCAGCAGTCTGTCTGTGAGTTCAGCCAAAGTTTACAGTTCTTCCAGAGCCAGGTGCAGTGCAGATCTGTAATCCTGCACTTGGGGGTTTGAGGCATGGCTGAAAAGCACGGTGCTGAGTTCCAGGCCAGTCTCAGCTACATAGCGACCCTCTGTCTCAGAACTGACTGACTAATAGTTACTGCGTGTGTTCCATCACGCAAGGGTAAACTGTGTTTAATTCTACTTGGAGTAAGTACAGTCACGCTCTCTCGAATGGAGTTTACACACTCTAAATAATTTCTAAATGTTGTATGGGACGGGGGTGGGGGGGCAGTGTATGTGTGTATATTCCTTCCAGAAAGACAAGAACTAAAATGGAAAACTACATTTGTAAGCATAGAGTGGTCATTGTCACTGTCCTGAGAGTTGACTAGCTTAGTGCTAGAGTATGTGCTTAGCATGTGTGAGGCCATAGGTTCAAATCACACACCCACGCACACATCAGAAGTCCTAATCCTGCACTTGGGGGTTTGAGGCATGGCTGAAAAGCACGGTGCTGAGTTCCAGGCCAGTCTCAGCTACATAGCGACCCTCTGTCTCAGAACTGACTGACTAATAGTTACTGCGTGTGTTCCATCACGCAAGGGTAAACTGTGTTTAATTCTACTTGGAGTAAGTACAGTCACGCTCTCTCGAATGGAGTTTACACACTCTAAATAATTTCTAAATGTTGTATGGGACGGGGGTGGGGGGGCAGTGTATGTGTGTATATTCCTTCCAGAAAGACAAGAACTAAAATGGAAAACTACATTTGTAAGCATAGAGTGGTCATTGTCACTGTCCTGAGAGTTGACTAGCTTAGTGCTAGAGTATGTGCTTAGCATGTGTGAGGCCATAGGTTCAAATCACACACCCACGCACACATCAGAAGTCCTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAGAAGTCCTTATAGTTTCTTCATAGAAGATTGGGAAACTGCTAAGCAGTGGTGGCACACGCCTTTAGTCCCAGCACTCGGGAGGCAGAGACAGAGCTCTGTGAGTTGGAGGGCAGCTTGGTCTGCAAAGCGAGTTCCAAGACAGTCAGGGCTACACAGAGAAACCTTGTCTCAAAAAAACAGAAAAAGAAAGGAGAAAAAGTGGAGTTTTACATGTGCTTACAGTTCTGTATTTCAGAAGCTAATGACTGATAAGGAAGAAATCTTAAGATAGCGAATTCTGCGTTTTAATGATCAGTATACAGTTCATGTAAAATGTCTTGTCTGTCTTTTGAATTAG
Seq C2 exon
AAGCGCCTAAAAGCTGCGGAAGCCGAGAGCAAACTGAAACAAGTGTACATCCCAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004685:ENSRNOT00000061921:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]