DreINT0098371 @ danRer10
Intron Retention
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25167884-25168152:+
Coord C1 exon
chr12:25167884-25167958
Coord A exon
chr12:25167959-25168093
Coord C2 exon
chr12:25168094-25168152
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATGTTTATCATTATGTACAGAAA
3' ss Score
4.81
Exon sequences
Seq C1 exon
CTTCCCTGGAAGTCGCTGACCAGCATCATTGAGTATTATTACATGTGGAAAACCACAGACAGATACGTTCAGCAG
Seq A exon
GTGAGCAGCATTTTCAAATGAATGAAGAAGTTATTGTTTTTTTTTTTGAAGCAACCTTAATTATCTGGAATTGTATTTCTTTGTTCTGACCGTCCTTCATCTTGCTTAGTGCTGAATGTTTATCATTATGTACAG
Seq C2 exon
AAACGACTGAAGGCAGCTGAAGCAGAGAGCAAACTGAAGCAAGTCTACATCCCTACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903:ENSDART00000127454:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.024 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCTGGAAGTCGCTGAC
R:
TGTAGGGATGTAGACTTGCTTCA
Band lengths:
132-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]