MmuINT0101452 @ mm9
Intron Retention
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:84181242-84183675:+
Coord C1 exon
chr17:84181242-84181316
Coord A exon
chr17:84181317-84183616
Coord C2 exon
chr17:84183617-84183675
Length
2300 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTGTCTATCTTTTGAATTAGAAG
3' ss Score
5.94
Exon sequences
Seq C1 exon
CTCCCGTGGAAATCCTTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATACGTGCAGCAG
Seq A exon
GTAACTTTCCATGCTACCCCACTTTGGTATGACAGAGAGCCTTTCTGTTTGGGTCATTGTCTGTGAGCAACGAATGAATCCTGGACCTGTTTGATCCTCCCTAGACTGCTTTAAATCCCATGGTTTCATGTCTGTAGGATATTATCTTTAACAGTTTCATCCTAGTGGTTCACTGTTTTCAGCATTCATCTTTAAAACTACTTGAGAAAGATGAAAGGGAGAGAGGCAGCTAGAGAGGCATTGTCTGGCCAGTGCCTGGTCTCCAGCAAGCTTACTAGAAATCCTTGGACGATATACTTTTATGGATTAAAATTTGAGCCTGAAGCTCTCGGCCTTAAAAATTCAGATACTGCTGCAGTTTTCTAAAATCTCCTTACCTGACATTTTTGTGGGCCTGTTCCGTAAGTGCTAGCCTCCCCCCCCCCCCCCCATCCCCTTTGGAGTCCTCTGTCCAGATGCTAGGGAGCAAATCTAGGACCTTGAATATGGTAGGTAGGCACATTGCCATTGGGCTCCAAGCATTTGACTGCAGTTGTAACATGGTTGTTGTTATTTTGAGACAGGCCTCACTGGGTAGCCCAGGTTGTCCCTAAACCAGAGTTCCCCCTGCTTCAGCCTCCAAAGCGCTCGGATTGCAGGTGTTTGCCGTCAAGCCGGGGATGGTAGCTTTAGTCTCTGTAGTTTGATGCTTTCTTCTCCAAAGTCATTCAAAAGTAGGGAATCATTTAATTTTTGAGCTCTTCCTAAATGTCCTAAATTCATGTAACTCTTAGTTACTTTTTTTGAAAAATCTGCCTTTAGAGAAAGGCATATTTCTGAAATGACCTCAGTAAATGTCTGTTTTAGATTCTTGCAGTCACGTGTCAGAACCAAGGCAGAGATTAAAAGCAGATGGCATTTGCCTAAATGTGCCAGCTGCACAGTAGCAGGGACTGGATGCTGCACACATTCATTTAAGGATCACTCTCAAGTGCCAGGCGTTGCCGTGGTCATGAATAGTGAATAGAAATCTACAGCGCACTGAACAATTTCCAGTGTCAACACCATATGGAATTCAGAAAGTGCATATTTTAAACAACTGTGCTGGAGATGAAGGCTATGCAGTCTGGAAACCTGTGCTGTTCAAGTTAGGAAGTGTCCCCAAAGAAGGCACAGACACGGCACTAAGGGCAGTTTACTGTGTTTGGAAGGAGTGTTTTCCAAAAGTGTTGACTCCATTAGAAGTCTCAGGTTGTCCCTGAATAATTTTGTCTTCATCTGTAGGACAACTGGAGGGGGCGTTTGAGTCTCTCTGGGGACAGTGACTGTACTTGACCCCCATTCCATTTGCCTTTATTTCTGTGCTGATCATGGTGTAGATCCGACAATATGTTCACCTTCCCATTCTTTGCCTGCGTTTGGCCCCTCCGTGACTTCCCATGCAGCGGTCTGTGAGTTCAGACAGGCTTGACGGGTCTTACAGAGCCAGGCACAGTACAGACCGGCAATCCCTGCACTTGGGAGTCTGAGGCAAGGCTGAACAGCATGGTGGTGAGTTCCAGGCCAGGCTCAGCCTAATAGCGAGCTCTGTCTCAGAACTGACTGATAGTTAGTTACTGCATGTGCTCCATCACGTGAGGGTACAGCTCTGTTCCATTCTATTCTGAGTAACTACAGTCACTCTCTCTTGCATAGAGTTTAGATACTAAATAATTTTTCTAAAAGCAAATGTTGTATTGGGGGTGGGGGGCAGTGTTTGCACGCATATTCCTTTCAGAAAGACAAGAGGTAAAATGGGAAACTAAACCTGTAAAAATAAGAATGGCCCTTGTCACTGTCCTGAGAGTTGGAGGTAAAGCTTCGTGGTAGAGCACGTGCTTGGCATATGTGGGGCCACAGGTCCAAATCACACACTCACGCACACCAGAAAAGTCCTTAGAGTTTCCTCATAGAAGATTGGGCAGCTGCCAGACATGGTGACGCACGCCTTTAATCCCGGCACTTGGGAGGCAGAGGCAGGCGGATCTCTGCAAATTCGAGGCCAGCCTGGTCTACAAAGTGATTTCCAGGACAGCCAGGGCTACACAGAGAAAACTTGTGTCAGAAAACAACAACAACAATAGAAGATTGGGAAGTGGAGTTTTGCGTATGCTTACAGTTCTGTGGTTCAGAAGCTAATGGCTCTCTTAAAAGTTACTGAGGCTTTAGCTTATGTACATGGAAGAAGTCTTAAGATAATGAATTGTGCACTGTAAGGCAGATGGGGTGTTAATGATTGGTATGCATTCCACGTAAAACGTCTTGTCTATCTTTTGAATTAG
Seq C2 exon
AAGCGCCTAAAGGCCGCAGAAGCCGAGAGCAAACTGAAACAAGTGTACATCCCGACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817-Mta3:NM_054082:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.153 A=NA C2=0.997
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: