BtaINT0096137 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34185017-34186720:+
Coord C1 exon
chr12:34185017-34185145
Coord A exon
chr12:34185146-34186585
Coord C2 exon
chr12:34186586-34186720
Length
1440 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTCTCTGTTTCTGTAACTAGGCT
3' ss Score
9.62
Exon sequences
Seq C1 exon
ATTTGTGAAACTTACCCCAGAGAACTATATGTGCCCCGAATAGCAAGCAAACCAATAATTGTTGGTAGTTCCAAGTTCCGGAGCAAGGGGAGGTTTCCTGTTCTCTCCTACTACCACCAGAGTAAGGAG
Seq A exon
GTAAGGAGCTGTTCTGACCTTATTAGTGGGGTACGAGTCCTCTGCAGGTCTAGGTGTCCAAAAGAATACCCATCTCTACGCTGAGAGGTCACCATCAGTGTTGCTGATAGAGAAGTGCTGACCTTTCCTTGATTACATTTCTGAAATTTTGAAACAAAATTATCCTGCAATACGGAAACTTTCATACTTGTCGTCTTCCTCCTCTCCCCTTAGAAGTTTAGTCGGGTTTTAGAAGGGAGCAAGAGGTAAAAAGTAAAACTTTAAACTGAAGTTCCTCATCAGCTTTTCACAGAAAAGTCATAGGGGTTTTATCACTCTCATTATAGCCTTTGTTTGACACACCCATGTTTGTGTACATTTTTTAAATGGGAAAACAGGGCTGAAAATATATATTCAATGCCCAGGTTAACAAATACAGAAAATAGGTCTGTATCCTCAGGCAATCCTTGTTTTCTTCTACTATTTTCTTATATTTCCATGATTTTATTTTGTGTGTGAGTTTAAACTGTGTGAATGTGAATTTACGTGTACTTTTTCCCTTCATGATACTATAATTGTAATGTTTGGGTAGGGTCAAGTTGGAGTTAATAAGAATGAGATTGGAGAAAAAGTATATGGGTCTAAATCTTAGAAATCTTTTTTAAGACTTTAAACAACAGTAAATAATCCAACACACATGGCTTATTATAGATATTTTTGCCCTCCTAGATTGACTGTATTTTAACCAAATTTGAATTGAAACTTATTTTTCTTGTAAGTCTCTTTATATATAAACATCAGTGATTTCTAATTAGATATCAGAATGACTTTGGAAAGTAAAAGTTCAAATGTTGCTATTTTTAAAAATTCTGTTCTACATTTATTGACTAAATCAGTTACTTGAACTTAGAAGAATCTTGTAACCCAGAGCACAGAATGCAAGTATCTTGTTAGATTACCCGGTAGGGAATCAAACAGTTGTTACTTCTTAGGACCAGAGAGTTTGTTTTTGTTTTTTTTCCCATCAAACTCTTGAGTAAGGAGGTATTCAGGTTTCTTAGTAGAAGAGAATATTGAGAAAACTTAGGTAAATGTCAAAATATTGGAAAGTATTTAATACAAATAGGATTTCCAAGTTGAAAGTGAAAGTAATAATTGCTCAGTCATGTCCGACTCTTTGCAACCCAGGCTCCTCTGTCTGTGGACTTCTCCAGGCAAGAACACTGAAGTAGGTTGCTGTTTCTGTCTCAAAGGGATCTTCCCAACCCACGGATCGAACCTAGGTCCCTGCATTGCAGGCAGATTCTTTACCATCTGAGTCACCAGGAAATCTAATCGTCCTGTCAGCTTTTAAACAGATTGCACATTTGATTTTAACTGTGGGTTCTTTCTTTTAAGCATGTTTTTAGGATGTGTTTTAGACTTCTCTGGATAACCTGCTTTCTCTGTTTCTGTAACTAG
Seq C2 exon
GCTGCCATTTGTCGCTGTAGTCAGCCACTGTCTGGGTTCAGTGCCCGGTGCCTCGAAGATGAACATTTACTTCAGGCCATCAGCAAGGCCAACCCAGCCAACCGCTACATGTACGTCATGGACACCAGACCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116:ENSBTAT00000004052:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.2=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAAACTTACCCCAGAGAACT
R:
TCTGGGTCTGGTGTCCATGAC
Band lengths:
262-1702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development