RnoINT0095401 @ rn6
Intron Retention
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40580268-40584661:+
Coord C1 exon
chr15:40580268-40580396
Coord A exon
chr15:40580397-40584526
Coord C2 exon
chr15:40584527-40584661
Length
4130 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TTTTGTCCTTTTGAAATCAGGCT
3' ss Score
5.88
Exon sequences
Seq C1 exon
GTCTGTGAGACTTATCCCAGAGAGCTGTATGTTCCTCGGACAGCTAGCCGGCCAGTGATCGTCGGCAGTTCCAACTTCCGGAGCAAGGGCAGACTTCCGGTCCTGTCCTACTGCCAGCAGGGCACTGAG
Seq A exon
GTAGGAACCTTCTTTACGTTATAAATGTAGTGTCTAAGCTTCTGGATAAACACTAACGTTTTGTTTGAGATAGGGTCTTACTATGTAACTCCAGATGTCCCAGAACGTACTATGGTAGACCAGGCTGGTCTTGAATGTATGGGCTCTGCCTGCTTCTGCCTCCTGAACTGTGGGATTAAAGGCATATGCCACCACACCTGGCAGTAAATACTAACTTTACTTCACAGATTTGCTGTTGTAATGTTGGTAACAGAGACCTGCTGGCTTTTCACTATTGTTTCTGAAGTTTTAAAACAAAACTCCCCTGAAGTACTCCTTTCCTGCCTTTCATTTCCAGAAGTAATGAGACCAGTGCATAGATAGCTTCTGTGTCTTCTCTTTGGGGTTCCTTTGGTTCAGACATCGGATAGCTTGCTTGTGCCAAGGCAAGTGTTGAAAGCAGGAAGAGAGCCCAGGGCATCTGGGCTTTGTTTGCTGTCCTCACAAGGAAAGGGGAGGAGGTGGGTCAACTTGGTAAACTGATTTTTAAACACATTCTGGACTCCCCACACAGAAGATTTTTCTTTTACTCTGGGTTCTGGAATTTCCTGGTGCTGGGCCGTGGTCTGCCATTTGCAGACTACCTAGAAACTCAGATCTCAGCCTTGGAGAGGGCACTTCTGTCTCTGCAGCCCTTTCTGTTCTCGGGTGTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTAGCTTTATAAGTGGACAGAGTTGCCTCCATTTCTGCAGGCTTATTTTCTTGCTTTCCACGTTCTGTTTTCTGAAAGAGTTCCTTAATTCTACTTCTCATTCACCTCTCAGATTCTTTACTTCTGAGACTGTGTGACATTTAAGAGTCTTTCTCTACTGGATTTCTTTAGTCACTTTTCTGTTCTCTGACTTGAAGCGGCCAATTCTCAAGCAGACTGGTTTGTTTTATTCCATGTGGCTGCCTCTTCCTCTTCTCATGTTTTCCGTTTAGAAGTCTGCATGCCTGAGTTGTATGCCTTTGCATTCTTTATTTTTCTGCTGCGCATTGGCTTCCACACAGTGGCTGTGTTTCGCTGGTGTATCGGCAAAAGGACTCGGTGTGATGTAACAGTCAAGAAGGGTGGTCAGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTAACTACTCCTCCAGAGGTCCTGAATTCAATTCCCAGCAACCACATAGTGGCTCATAACCATCTGTAATGGGATCTGATGCCCTCTTTTGGTGTGTTTCTGTGTACTCATATAAATAAAAATAAATAAATCTTTTTTTTTTTTAAAGAAGGTAATCAGAACTCACATTCTGCTGTGTAGACTACATCTTATCCTCTTTAGGAAAGTTCACACCTTCAGTCACATCCTGTGCTGTGTCCAGGCTTGAGGTTAATCTCTTTGTAGACTTAAGTGTTCAGGGAGGAAGGATCTGGCAGTCACAGCTCCTCTTCACGTGTTCAGCCACACCCTGCTCCCTTCAGGTGCCACTCCTGTGCTCTGACCTTGCAACTGGATTCCTCCAGCTCCTTCCTGTGGCAGGTACTTCCTCTGCCAAACCAGTTCTCAGGCTGCTGTTGTTCCCAAATGTTGTCGGAGTTTCTTTCTGTGTTCACGCTTGTCCTGGTGGTCCCCTATGTCTTATATGTGTTAGAACTTGGTTCAGGTAAGTTTCAAACTGAAGTCTAATTTTAGTACCGTAAGTCCTAGGGTGTTACCTGGTCACCTTTGACATACCTGTTAGATTGCACTAGTTATTGGAAAAGTAGGCTGTAAAATGCTTGTGGTTGACTTAGTAAACAAAAAGTAGGTATACAAGGGGTGTGGAGCACAGGATTCCTTTAAAACAACAACCAAACTCTGCTTGTGCTCAAAGAACTAAGACGCCAGCCACAGCCAACAATAGAAAACTGACTAAAACATTTACAGACAACGGAAAAGAACTCTCAAACACTAAAAACAACGTAATAGTCCTCATTGTCTTCTGCCATTGTAATTTTGAGGTTGTATTTTTGTGTATATGTAAAGAATACAAACACTTATACTTGTATTCTTTGTCTGGCGGAGATGATACTCTGTTGGAATGTAGAGTTAAGCTGGAGGTGACATGGGTAAGACTACAGAGAGATATATGCTTCTAAATCTTTATTTATTTTTTTATCAGAGTGGGGCAGGATGGGAAAGGGTTCCAAGACAGGGTTTCTCTTTGTAGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCACATAAATCCATCTGCCTCTGCTTCCCAAGTACTGGGATTAAAGACTTCCACCACCACACTTGGAAGTCTTTTAATGTTTTAAGGAATTAAAATATTCATTAATTCATTTTTTACAGATATGCCTCCCCTAAGATTATCTTTTCAAATCTTTATGTCTCACTTTATAAAAGGCTTTATGGTTTTTTAGTAGAGAAATAGAATTTCAGCTGTAAGTTTATTTTTTAATTTTTATTTTACATTTTGTTTTAGTGTGAACTGTGCAGACCTGACCCAAGAAGTTTCAGTGGAGAATTTCAGTATATTGCCTAGAGACTGTTTTTGTGATATTTTGATGAAGAGACACCATGACCAAGACAACTCTTATAAAGGGACAACATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGTAAAAAAAAAAAAAATAAATAAATAAAGGGAAAACATTTAATTGGGGCTGGCTTACAGGTTGAGAGATTCAGTCCATTATCATTAAGGCAGGAGCATGGCAGCATCCAGGCGGGCACGGCATAGGAAGAACTGAGAGTTCTCTTGTTCTGACTGCAGCCAGGAGACAGCTGACTCTTCCACACTGAGAAGAGCTTCAAAGTCCAACCCACAGTGACACACTTCCTCCAACAAGGCCACACTTCCTAACAGTGCCACTCCCTATGGGCCAAGCATATTCAGACCACCACACATGTTTAGGTGTTTGGCTTAAATGTGTATGTGTACCATGCATGTGCCTGGTGCTTAGAGGATCCCCTGGAGCTAGAGTTGCAAAAGATTATGAGCCTCCATGCAAGTGCTGCCCTCTAGAAGAGCAGCGGTTATTTTTATCTGTCAAACCATCTCTCCTGGCCAAGATTAAAAGCTCCTGGTAAGGGTTAGAGAGATGGGGCAGTAGTTAAGAAGACTTGAGTTCAGTTCTAGCACCCATGTCCAGTAGATCACAATTGCCTGTAATTACAGCTCCAGGGCATTTAATACTCTTGGCTTCTGAGGGGGCCCACATACAAGTGTTATACACTTGCATAGGTACACACTCATAAATAAAAATCTTAAAATTACTTATTCTATATGTCCTGTTACTTGGACATCTTCTTTACTTGAACTTGAGCTGAAAGTAACTCGTCAAATACCTGGAATGCAGATGTTTCCTTAGAGTTGGTTCCTTGATAGACAATTAACCAAGGGCTACTCCTTAGGGCAACAGTGTTCTTAATACAATTTTGATAGTGTGTGTGTGTGTGTGTGTGTGTGTACAAACTAGGCAAGAAAACATTTAATTTTCCTAGAATAAAATATTGGGAAGTGTTTTATGGTTTTATTGATGTGAATAGATACTGTGACCACAGGAGCTCTTATAAAGGAAAATATTTTACTATGGCTGAATTACAGTTCAGAGGTTTAGTCCATTGTCATCGTGGCAGGAAGCATGGCCGTGTGCAGGCAGACATGGTGCAGGAGAAGGAGCTGAGAGTTCTGCATCTGGATCAGCAGACAGGAAGAAGAGAAGGCCTGGCTTGACCTTCTGAAATACCTCAAGTGATACAATTCCTACAACAAGGCACACCTTCAATGATGCCACTCTGACCGATGTCTATGGGGGCCATTGTCATGTAACCACCACAGGAAGTGTAGGCAGCATCTAGATTGTGAGAAGTATTTATCTAAATCAAGTAATTTTTAAACAGTTAATACTGTCTAAATTTCTTTCTGACTTTTAAGTAGGTTGTGTGTTTGATTGAAATACTTGAGTCTTTTTTAAGTCTTTAGGGTCCTTTTATAATCTGTTTTTTGTCCTTTTGAAATCAG
Seq C2 exon
GCTGCCATTTGTCGATGCAGTCAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTAAAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918:ENSRNOT00000065328:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(18.9=100)
A:
NA
C2:
PF066029=Myotub-related=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]