HsaINT0106298 @ hg19
Intron Retention
Gene
ENSG00000139505 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:7453]
Coordinates
chr13:25835806-25840085:-
Coord C1 exon
chr13:25839957-25840085
Coord A exon
chr13:25835941-25839956
Coord C2 exon
chr13:25835806-25835940
Length
4016 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TTCTGTCCTTTAAAAAATAGGCT
3' ss Score
6.08
Exon sequences
Seq C1 exon
ATTTGTGAAACTTACCCCAGAGAACTTTATGTTCCCCGGATAGCAAGCAAACCAATAATTGTTGGTAGTTCCAAGTTCCGGAGCAAGGGAAGATTCCCAGTTCTTTCCTACTATCATCAAGATAAGGAG
Seq A exon
GTAGGATGCTTTTCTTTTGATTTTAGAAATAAAGTATAACTCATCTTCAGGTTTAAGTATCTAAAATAACACTTTTTTTTTTTTTTTGAGATAGGGTCTCGCTCTGTTGCCGAAGCTGGAGTGCAGTGGCACCATCTTGGCTCACTGCAACCTCCACCTCTCGGTTCAAGCAGTTCTTGTGCCTCAGCCTCCCGAGCACCTGGGACTGCAGGCGCGTGCCACCATGCCTGGCTAATTTTAGTAGAGACGAGGTTTTGCCACGTTGACCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTTAACCTCCCAAAATACTGGGATTACAGGTGTGAGCCACTGTGCCTGGATCAAGAACACTATTTTTTACATTAAAAGATTGCTAATGGAGAAGCACTGGCTTTTTGTTTAATTACGTTTTTGCAAATTTAAAACAAAACTACTCAAATACAGAAATTTTCATACTTCTTGTCATCTTTTCTTGACCCTCCCTTCCTTCCAGCAGTGACTTGAAAATAATAGAATTAGTTAACAGATAGGATCCTCTTTCTTTCCTGTGGTTCTCTTTTGATTCTGCTTGTGTTTGGGAAAACCAGATAGTTTTGATAAGACAACCGCTGAGACAAGGGAGAGAACCAAGGGCATTTCAGGGTCCCATTTTAATAGTAAGCTCAAATCAAAAGGATTTTGCAACATGAAACAGTGGAGGAGGCATCTTTATAGTGAGATGCTGTAATAAGGGTTGCTTATATTAGTAAAACTTACCTTTGTAGCCTACTAATAGAAGGCCAAGAGGTACTGTATGTTAAATGGTTTACATGTATGTCTTCCTAACTTTGTAAGGTAGGCTTTACTAATTACCTGTAACTTTCAAGTGGGGAAACTGACATTCAAAGAGGGTAAATTACTTCCTTGTCTCACAGCAAGTAAGTTGAGGAATTCTGTGCCATTTCTGACTCCCAGTCCTTTGGGACCTGATTTTGTTTTCTCTGAGAACTTTTAGAATCCTCTTTTTCCCCAGTGTTCTGAAATTTCTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCTCTTGTTGCCCAGGCTGGAGTTCAATGGCGTGATCTCGGCTCACAGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCTGCCACCATGCCCAGCCAATTTTTGTATTTCTAGTAGAGACAGGGTTTTACCGTGTTGGCTAGTCTGGTCTTGAACTCCTGACGTCAAGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAAGATTACAGGTGTGAGCCACTGCGCCCTGCTTGTTCTGAAATTTCACAGTAATGTCCTTTTAAATCTCATCCAGAAACTCAGGTCTCAATTTTGGGAATTTGCTTCTCTATTTCTTTGATAATTTCCTCTGTTCTATTAATTTTCTTTGTCCTTTTTATTTATTAGTTGACAATTGGGCTTTGTAGAATAAACTTCTACTTTTTTAAAAACTTTCTCCTTTATTTTTCATTTTTTTTTTTGGATTTTCTGGAAGATTTCCTCAACCTCATCTCCAGTCTGTGTCTTAGATCCTTTTTTTGCTGTGGTGTTTTTAATATCTGAGAGCTTTTCCTATTTTCTGAAATTTTTAAAGATGGTTTTCTATTCCTGGATGTGATGTTTTAGTTCTTTGAGGATGTTAAAGATTTAAAAAAATAATTCTCATGCTTCCCACATTAGTTATTGTTTTGCTCAGAGTTCCATTTTTTTCTATTTATTTAGTGTTTTTGTCTTTCATGTCTTTCAAATACCTGTTTCTTGGCTGAGTTCTCATATTCAAGCTGTTTTGAAGTTTGTGTGCAGGAATGGTTTGTATCTTGGGATTCTTTCTTTGTTTTCTTTTTTCTTTTTTCTTCTTTGAGACAAGGTCTCGCTTTGTTTCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCCAGTGATTCTCCTGCCTCAGACTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTTATATTTTTAGTAGAGATTGGGTTTCACCATTTGGCCAGGATGGTTTCGAACTCCTGACCTCAGGTGATCCACCGGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGTGTGAGCCACCGTGCCTGGCTTTGGGATTCTTTCTGTTGTATAAGTTGGTTTCCTTAAAGAACAAACCTCTAATTTTGGTCCCAATGTGTATAGTAAGTCTGGCCATGATCCAAGGGTGAGAAGAGTGATGTCAGGATTTCACATTTTGTTATGTAGACTTTACTTAATGCTCCTAGTCTTTGTGAGTATAGGGCTTCACCCCTGCCCACAGCTGTGTCTATTGTCTATAGAGTCTTCAGGTTCATCCTTATCATGGAATAAACTTTGTCTTCAAGGTAAGGGAGAATCTGGTGGTCTTAGCTAGTTCTCGTACAGGCATTCAAGCAGTTCTCCTTTTTTTCAGTTATATACCTGCTCAAGCCTTCAGAGGTTTTGAGCCTTTTGAGATTTTGCTGCACAAAATACCTTGCTTCTTACTGACTTAAGGGAGTTAGCAGCTTTCTTTGTCCTGTAAAATTGGTTATCACTTGCTAGTCAGCTGTCATCTCCCCAAATTTTATTGACATCTCTATGTCTTTTTTCCCATTCTCTTTGTCCCTGTGGTTTTATGCATTTTAACTTTCTTTATTCGAACCTGACTTGGATTTTGGGAAGGAGCAGAGGCAAAGGGGTAAGGGTTTAGACAGAAGTTTCTAATCTGCTTTTCACAACTAAATCACAGAGAGGTTAAATGGTTATGGCCTCTCTTGACACAGCCATATGTGTAAACATTGTTTATTGGAAAGTTGGGCTGAAAATAGTTATTCTGTGAACAACTTAACAAATCAGAAAGTAGGTCTGAAAAGAATTTAATAAGGCAATGTTCATTTTCTACTGTTTTATCATATTTTCGTGGTTTTATTTTGTGAGTTTAAAATATGCAATTGTGTGAATTTGCATGTATTTTTGTTTTCCATTGGAGAAAAAGTATATGGATCTAAATCTTTTAAATCTTTTTTTAGGACTTTAAACAATAGTAGGCTGGGCATGATGGCTTATGCCTGTAATCCCAGCATGCTGGGAGGTGAGGTGGGCAGATCGCTTGAGCCCAGGAGTTGACAACCAGCCTGGGCAACATGGCAAAAACCCATCTTAACAAAAAATACAAAAATTAGTCAGGCGTGGTGGTGTGTTCCTGTAGTCCCAGCTACCCTGGAGGCTGAGTTGGAAGGATTGCTTGAGCCCAGGAGGTCAAGGCTGCAATGAGCTGTGATCACGCCACTGCATTCCAAACTGGGTGACAGAGCAAGACCTTGTCTCAAAAACCAACCAGCCAAACAAAAAACAGTAAATAATGAATCCAACCACTCACTACTTATAGATAATTCTTGCTCTATTCGATTGACTGTATTTTAACTCAAATTTGAATTGAAGGTCATTTTTCTCATTTTATATTAAGATTGCCGATTTCTAATTAGAGATCTTAAAACCTTTAGAAAGTAAAAGTTCCAGTGTTGCTACTTAAAAATTCTTGTTCTATTTTTATTGACTAATCTTTTACTTGAACTTCAGTTGGAAGGATCCTGTAATCTAAATGGAGCGCAGAATGAAGATAACAGTAGGTTACTTCACAGAGAATTGACTGGGTGTTATTTCTTAGGACCCAGGTTTCTTCATCAAACTAGATAAGGAGGTATTTAGTTTTCTTATGAGAATAGAATATTGGGAAAACTTAGGAATGTCAAAATATTGAAATAGTATTTAATTCAAAGAGGATCTTAAAGTTAATGCCTCCTAATTATCATATTTGATTTTAACACTTTTGGCTTTTTTTTCTTGTAAGCATCTTTAAAGACATTTTAGAGATCTTTGCATAATCTCTTTTCTGTCCTTTAAAAAATAG
Seq C2 exon
GCTGCCATTTGTCGATGTAGTCAGCCACTCTCTGGATTCAGTGCCAGGTGCCTGGAGGATGAACATTTGCTTCAAGCCATTAGTAAAGCCAATCCAGTCAATCGCTATATGTACGTCATGGATACCAGGCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139505-MTMR6:NM_004685:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.2=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)