BtaINT0096139 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34188804-34189799:+
Coord C1 exon
chr12:34188804-34188936
Coord A exon
chr12:34188937-34189689
Coord C2 exon
chr12:34189690-34189799
Length
753 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
GACTGTCTCTCCCCTTGCAGTCA
3' ss Score
10.79
Exon sequences
Seq C1 exon
CTGAATGCAATGGCCAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTTGTTGGAATTGAAAATATCCATGTCATGCGGTCCAGCCTTCAGAAATTATTGGAAG
Seq A exon
GTACGATTATTGCATGCCTTCTAGGCAGCTTTATTCAACAGAAACATAATGCTTGTCACAGTATAAAATTTAAAGTTACATGCTTAAAAGTTTTCTGGTAGTTACATTCAGACGTGTAAAAAGAACAATTGAAATAAATTTTAATAACAATATATTAAAACATTATGCTAACATGTAATCAGTATAAAAAATTAGTAATAGTATGTTTTGGTTTTTTCAAACTCTTTAAGACCTAGAAATTGGCTAGGGTGTCTTTTATACTTGCAACACATCTTAGTTTGGAATACTCACATTTCAGGTGTTTAATAGTGATATTTCAGTAGTGGGCAGTACTATATTTATTGGGCAGTATAATTCTAATGGTTTTACAAAAAATTGCTATTGTTTAGATATTTTCATCAGTCAGTACCATGAGGATTTAATATATAACAGTATTCTGTTTAAATATTAAGCTATCTTTCCAGTCCTGATATGGAATTTTAAAAACTAAAATATCAGACTATTTTTAATTAAACACTTGTGTTGCAGATTTTTTTTAAAAGGGACATTGGAACACTTTTTTTCTTTTCAAAGCACAAGGAATGACAGAAAAATGTACCCAAAAATCCATTAATGAGCTTTTAATAGCATGTCTCCATGTGTAAAGAGTCTAGCCTGTTTGTTTTGTCTTCTTCAGCTGGCTCCCTGGGGGGGCTCTTGAATAGAAGTGGGGACTCAGGCTCCTTCCTAACTGGACTGTCTCTCCCCTTGCAG
Seq C2 exon
TCAACGGTACCAAAGGGCTTTCCGTCAACGATTTCTACTCTGGTCTGGAAAGCTCAGGATGGCTTCGTCACATCAAAGCTGTGATGGATGCTGCAATCTTCTTAGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116:ENSBTAT00000004052:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCAATGGCCAACAGAGC
R:
GGCTAAGAAGATTGCAGCATCCA
Band lengths:
238-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development