MmuINT0101997 @ mm9
Intron Retention
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60910831-60911864:+
Coord C1 exon
chr14:60910831-60910963
Coord A exon
chr14:60910964-60911754
Coord C2 exon
chr14:60911755-60911864
Length
791 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AAACCTTCTCTATTTCACAGTGA
3' ss Score
7.61
Exon sequences
Seq C1 exon
CTCAATGCAATAGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTCGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAG
Seq A exon
GTATGATTATTGTACACCTTTTAGAGAGCTTTGTGCAATGGAGGTACAGTGACAGTCACATAGGGCTTTAACTGTTCTGTCACTCACACTCAGAGTAAAAAGAATGTGGAATTGACATTAATGTGACATACTAAAAGTATTACTTTTAGCATGTAGTCAGTACTAAAACCAATAGAACAGTCCCCCCACCTCTTCCCATCCTTCCTTCCCTCTCCTCTCTCTTTCCATCCCCTCTCCCCCTCTTACTAAGGTGCTTACTCATACCTTTTTTGAGACAGAGTATCACCGAAGGTATCCTCAAACTTCCTCTGCCACCAAGGCTTGCCTTTAATTACTGCTCCTCTTGCTTCAGCTTCTCAGGTGCAGGGATTACAGTGTGCGCAAGCATAGCAGCGAGATCTTCTATTGTCATCCAATCATTCTTTATTCTTACATCTCACTTCAGCAGAGGCACATTGCGGGGGGGGGGGGGGGGCAGATGTCCTGTCTGCAGTTCTAATGGTCACTGTTGGTAGAGATCATTGAGTGGTCTCTGCACTCTTCATGATGTCATTCATATGTGTGTATGTATATAGCAAGAGAATTTAAACATCTGTGCTACCTTTTACAAAGGCAGATGAACATTTATTTTAAGCCTAAGGAATGACAGGAGCTTTATTCAGCTTCTCGTAGCACATTTAATTGATACGCATTTTCCCCAGTTCACTCCCCAAGATCATTGCAAGACAGATGTGGGAAGGAAGAGTGGGCACTCCAGCCGCCTTCTAATTGAAACCTTCTCTATTTCACAG
Seq C2 exon
TGAATGGTAGCAAGGGGCTTTCTGTCAATGATTTCTACTCTGGTTTGGAAAGTTCAGGATGGCTTCGCCATATCAAGGCTGTTTTGGATGCTGCAATCTTCTTAGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987-Mtmr6:NM_144843:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAGCTGGAAAAGGTTA
R:
GGCTAAGAAGATTGCAGCATCCA
Band lengths:
223-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: