DreINT0098737 @ danRer10
Intron Retention
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24904209-24904526:+
Coord C1 exon
chr24:24904209-24904341
Coord A exon
chr24:24904342-24904416
Coord C2 exon
chr24:24904417-24904526
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
AAAGTGTTTTTTTCTTGTAGTGG
3' ss Score
6.14
Exon sequences
Seq C1 exon
TTGAACGCATTGGCAAATCGAGCGGCAGGGAAAGGATATGAGAATGAGGACAATTACTCCAATATCCGCTTCCAGTTTGTGGGCATTGAGAACATCCATGTTATGAGGGGAAGTTTGCAAAAGCTTCTAGAAG
Seq A exon
GTTTGAAATGTTTAAAGTAGGACATTTTGGTTTATTTAATATTTGGTGGATTGTCAAAGTGTTTTTTTCTTGTAG
Seq C2 exon
TGGTGGGAACACGCTCCCTTTCTATGACTGATTATCTGGTTGGACTGGAAAACAGCGGATGGTTGCGTCACATCAAAGCCATCATGGATGCAGCTATATTCCTTGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794:ENSDART00000005845:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCAGGGAAAGGATATGAG
R:
TCCGCTGTTTTCCAGTCCAAC
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]