BtaINT0096249 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43289592-43290658:+
Coord C1 exon
chr16:43289592-43289720
Coord A exon
chr16:43289721-43290413
Coord C2 exon
chr16:43290414-43290658
Length
693 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
ACTGGTTTCCCACCCTTCAGCCC
3' ss Score
6.25
Exon sequences
Seq C1 exon
GAGACAGAAGGCTATGCAAGTGGATGCCACAGTGTTCACCTGCATCAGCATGCTGGCCCGAGCCATGGGGCCAGGCATCCAACAGGACATCAAGGAGCTGCTGGAGCCCATGCTGGCGGTGGGCCTGAG
Seq A exon
GTAGGTGTCAGGAACCTGAGCTGTCCCTGTCTCGGTTAGTATGAGGCTCGAGCCACACTCCTGGGTCTGTGTGGAAAGAAAGAGGCATGGCTGTTGGCATATAACATTGACTAGGTAGGATAGCTCACACTAAATACAGAGGCTGATTTCAAATCCATGTTTCATCACTAGCTTGCTTGGTGATTGTAACTAAATTATTTAACTTCTCTGAGCCTCAGCTTTCTAGTCTGAAAAGTGGGTACAATAACAATTCCTATTGTCTGGATTTGTCCTGGGGATTCAGTAGAAGAGTTCACAAAGTGCTGTGTGTTTAAGAAACGCTCTGGTAATGTTCGCAGTTGTCATTTATATTATTATGGGCAAATTACTTAAGCTCCCTACACTTTCGTTCTCTTCATCTATAAAATAAGGATGATGCTGTCAATCTGCTTCCCAGGTAACTTATTGAGACTTGGTTTTAGTGGCTAAATTATAGTAAACAGGTTTGCTCAATACAAAATCATAGATTGTTTTGAAATCCGGAATCAGACCAAGAGATTTTAGGATATATATTCAATTTTATAGTATTCTTTCTGCTGTAAAAACCAAGCAGAGATGGGACCCAGTCCCTGTTCTGGAGAGAAAGGGCTGTTTCTTCTCCAGAACAGACCAGATGTCACATGCCCTTGTCGTGACTGGTTTCCCACCCTTCAG
Seq C2 exon
CCCTGCCCTCACAGCTGTGCTCTATGACCTGAGCCGTCAGATTCCACAGCTGAAAAAGGACATCCAAGACGGGCTCCTGAAGATGCTGTCCCTGGTCCTTATGCACAAACCCCTCCGGCACCCCGGCATGCCCAAGGGCCTGGCCCATCAGCTGGCTTCCCCTGGTCTCACGACCCTCCCTGAGGCCAGTGATGTGGGCAGCATCACCCTTGCTCTCCGAACTCTCGGCAGTTTTGAATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325:ENSBTAT00000020386:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTATGCAAGTGGATGCC
R:
GTTCGGAGAGCAAGGGTGATG
Band lengths:
344-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development