DreINT0098807 @ danRer10
Intron Retention
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46288881-46292840:-
Coord C1 exon
chr8:46292712-46292840
Coord A exon
chr8:46289126-46292711
Coord C2 exon
chr8:46288881-46289125
Length
3586 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GCCAACTCTCTTCTCTTCAGCCC
3' ss Score
7.27
Exon sequences
Seq C1 exon
GAGGCAGAAGACCATGCAGGTGGATGCTACTGTATTTACTTGCATAAGTATGCTGTCCAGAGCTATGGGGCCTAGCATCCAACAGGACGTCAAAGAACTTCTGGAGCCCATGCTAGCTGTTGGTCTCAG
Seq A exon
GTACTGTACAACTGCTTGGATTTAGTCTCTTATTCTCAGTTATATATGCAGGGCTCCACAATAAGGACTGCCCGGTGGCACAGGGCCAGCGTGATAGCCGCTTGGGACAGTAGACAGGATCATTACTGGCCCGATTGGGACAGTGCTGCCTTGTCTCTAACATTTAATTAGTCTGTGACTATTTGTCAATTGCATGCATTTTAAGTTTGTGCTTTTAAGTCTTTAAACACTACCTTCTTTGTGATGTCGTAAACACCATATTGCTTTTCAGTACCTCTTCTCAGATTTGATGTTTTGAGCATGCAATCTTTTTCCGTAACTTGGTAACAACCAATACAGCGAAGAAACGGCAACATCAAATTATAAGGCTAAAAGAAAATGTCTGTTTCTAATGTCTTGCAAGCAGACATTTATGTGTGAACAACACAATAAAAAAAATAAAGTCATGTTTTGCACAGTTTGCCGTCAGTTTGACAAGTCAGCCACCAATTGTTAAATAATTTCGAACCGCAATAAAATACCACCACGTTTTCCTTTGCTGTTTTTGTTTGCATGACACTTTTCGAACAATTTCAAAGTATTGAAATTGTAGAATCACAGATTTTATTTTTGACACATTACTTAAAATATGCGGCTAAAAATAGCTATTAACTTCCATTTTTTAAATTTATTTATTTATTTATTTTTTTTGGATGGGGCCAGTGAAAATTTTGGCAGGGCAAGTTAAAATCTGAACCACTGGCCCGATCGGCCCAGTAGAAAAAATCCTTAGTGTTTAACCCTGATAAGGCAGTCATTGCTTAAAATGCAATAATTCAGTACTAAACACTATTCACAACTCATTCAGACAAGTCAAGTAAAAAAAAATGTCAACATAAATTTAGTGAATTGTGCACAAACTTTGAGGCTTTTTACATGCCAAAAGATTTAAAGGGAATGTGATACGGCTGCACAATATTGGAAAAATTAGATTTTTCCTGTGAAAAATATTGCAATATGAATACAGTTTCACAATATGGTTTGAATTAGGGGTGTCAAAATTAATTGTTTCTTCTGTGCACCGCGATGCAGACGCGGACAATTCGGTATGGGTTCAGTAATAATCATTACCGGTTATTATGTACTGACGTCATTTACCTCATATGCGCTCTGTCGCAAAGGAAGGTGAGTGCGGGTATTTTCAACACTCCAGGAGCCAACTCAGGGCCGGCACGTGGCAAAGGCAGTATAGGCAAATGCCAAGGGCGCTGTAAATCCAGGGGGGCGCCAGAAATGAGTGCGGTTAAGTTGGTTTTGTTTTCGATATTCCTGACACATTCAGTGATAGACGGCAATAACTCAAAAACCTCTTACCCTAAAAAGATCTAAAGTGTGTTTCCTACAAAAAGACAAAGCTGGTTATGTTTCACAGCTGTCTTTTTCTTTTTTACCCAAAACCTGCTTACCGCGAGTATGTTGGTTCCAAAACAGGTGATAAGAGTTAGTTAAATCAACCTCCTGAAGATAACCGCAGGTTAATGCGCGTGCACGGCACAAACCTAAAGGCATTTTCAGTAGATCGCCGAAAAAATGTTATGAAAAAAAAAAGCTATGCACTTATAACCCTCTCAAAATGAAAAAACTTGTATCTGTGTGTCCACATCCACAAATATTCTCATCAAAAGAGCATGCAATGCTGAGTAAGCTCTCTGAAACAGACAAACAAATGGAACAGCAACTTACTACTCACTCTGGAACATAGCAATTTACTCTCTGAACATTTATCTTCAGAGAGTAAGTTGCTATGGCTACTTAACATACAGTACCCAGAAGTTACCTCCGATTTTGGAACCAAAGCTGAGGTTATCCACCTACTTACTCTCAAACTTACCCTGGTATGTCACATAACCTGCTTTCTGGAACAGCCCCCAGTATAGGTTCACACCTCTAGTTTGAATGGCACTATTTGATGTTTTCTGATGAGTCAAAGTATCCGATCACACCGAAAACGATATTGCGTTGAACGGCACTTTTTTTAAAATGATTTACTAACAGCTGTGAGTGTTTTGCGTGCTGTTTATTCGCTCTGCGCACCTCGCGGTTTTGTTATTGCGCTCTGTATGGTTGCAGTTGAAACAAAAGTCAAGTCTGAGCAGAAAAGGCGCGCTACGTCAGTCGGGTCTTTTTCATTCTCCAATCAACTGAAAGCAAAACGTATTTTAAAACGAAAACGTTATAGTGTAAACAGTGCCTTAGTTACATTAAAGCTATTATCTACGGAGACCCGGAAGGGTCGTAATGGTGGAAGAAAAAAATGGGTGGGGGAAAAAAAAAAACAAGTGATAGGTAAACATATTTTTGAAAGTTTTTGCGTTCCCTCACAAATATGTTTTGCGTTATCTCGCAAATATGTTTTGTGAGAGAACGCAAACATGTCTTGCGTTCCCTCGCAAAACTGTTGTATGACAAACATTTCACTTCATACATGACAACCCTCCTGTTTTTGCTGGAATTGTTCCGTATTTTACCATTATATTCTATTATCAGGTGTTTTCCCATATTTTTCTCATATTTTAATCTTGAAAGCATGTTGAAAACAATATTAAAATGTCTGCATTCACTATCTTTCCATTTGAGCTGTGCGTCGATCAGCGCCCCTCATATGCACTGATAAACTGATCCCAGATCAGCTTCTGTAAACGCTATTTAAAGTGACACCTCTGTCATCAAACAAGTGAAGAGCAGCAAATAATTTTCTCATTTTGTTTTGTTTGATGAGGTGTCACTTTACGAACGCACTGATATATAATGAAAGCATACTTTAACTGTTTGTGCTCAATTAAGAGGAAAGTAGCTGTTAAAATAAAACATGCAGGATGGACATGTTTACGTATTATTCAGTGTATTTGTCTGTTTAAGCATACACCCTAATCCGAAAGTGTCCTGCACTTCTGCTCCTCTGTAAATAGGGTGTACAGAAGCTGATCTTGAATCAGTTTATTGTACAGAGCGCGTCTGTCAGTCAGCGCTTATACATGCATTCACTGGTTCAGAGGTTGCATATGAAAGGTGATGATCAACACACAGCTTTAATGTAATGAAAGTGATGCAGACATTTTAATATTAATTTCAACGTGCTTTCAAGAATAAAAATATATCAGAAATATGGGAAAATACTCAATGATGGGATGGTAGAAGGACAGAATGGTAAAATACGGGAGAATTTCAGCAAAAACGGGAGGGTTTACATGAATGAAGTAAACAGAAAGTGTTTTAGGAGAAACAGTTTTGCAAGATAACGATTTTTCCTCCCACCCAGGTATTTTTTTCTTCCACCAATTTTTTTTCTTGCACCTATTTTTTTCCCCCCCACCATCACGTCCCTTCCGGGTCTCCGTAAGAATCAAATAAAAAAAAACATTGTGAAATTTGTAACCACCCAGAAGTAAGATTTTGGGAAAAAAAACAATCCCGAAAAGTGTTTTGTCCAAATAAATTTTATTACACACAAGAGTCTCTTCAACACTATAAATAATCCTGTATGCATGACATAGCATTGAACAACCCCTTTAAACATTATTTCTCTTGCCAACTCTCTTCTCTTCAG
Seq C2 exon
CCCTGCTTTGACTGCAGTGCTTTACGACCTGAGCAGGCAGATCCCACAGCTGAAGAAGGACATTCAGGATGGTCTGCTAAAGATGCTTTCACTTGTGCTCATGCACAAGCCTCTTCGTCACCCGGGTATGCCCAAGGGCCTGGCGTATCAGCTATCATCGCCCAGCCTGACCAATATCCCTGAGGCTAGCGACGTGGGCAGCATAACTCTGGCACTGAGAACTCTCGGCAGCTTTGAATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196:ENSDART00000122801:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0027515=EPSP_synthase=PU(38.6=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]