GgaINT0133905 @ galGal4
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4186880-4187830:-
Coord C1 exon
chr21:4187702-4187830
Coord A exon
chr21:4187125-4187701
Coord C2 exon
chr21:4186880-4187124
Length
577 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGCCTGCTCCTTTCCATCAGCCC
3' ss Score
7.53
Exon sequences
Seq C1 exon
GAGGCAGAAGTCTGTGCAGGTTGATGCTACAGTCTTCACCTGCATTAGTATGTTGGCACGAGCCATGGGGCCAAGTATCCAGCAGGACATTAAAGAGCTTCTGGAACCTATGCTGGCCGTGGGTCTGAG
Seq A exon
GTGAGTATGAGGCACAGGAGCACTTTTTTCTATTCACCACTGGATGGCACTGTTGACCATGCAGAAGCAGATATTGAAAGTATTCATGTTGTGAAGGAAGATTACTTCTTTAAATGATTTGTATTGCTCTTTCAGAAGAGTAATATTATATGTCTCTTGAATTACTTAAGAACACTCGTGTCTGTAAATAAATATTTTTTTTATTAAAGAACCTAGTGAATTCTAAGGCAATCTTCTTTACTTCCCATTGTTCAAATACTTTTGGCAGCAGCCTGCAAAAGTTTAGAAAGCCTCTGTAGGACAGCAGATTTCTTCCATATCATGTTGGCAGGGAAGCAGAATGATGAATATTTGCTTCTGGTTTCTCTTCCATGGGAAATTTCATAGCTCATGAAGTTATTAATATGTGAAGGTACAGAGGAAGTATCCTGGCAGCATGAAGCTGCTTAGATTAATGTTACCACCTGGAGCTGAATTTATTTGCCTTTGTGTCTAAGAGGCAAAAGTAAGATGAATCACTGAAGTTTATATCAATGTATGCTGTCATGATGACTGTCTGCCTGCTCCTTTCCATCAG
Seq C2 exon
CCCTGCTCTAACAGCTGTGCTATACGACTTGAGTCGTCAGATCCCTCAGCTAAAGAAGGATATCCAGGATGGGCTGCTGAAAATGCTTTCCCTTGTTTTAATGCACAAACCTCTGCGACATCCAGGCATGCCAAAAGGTCTTGCCCACCAACTGGCCTCCCCTAGCCTCACCAACATCCCGGAGGCCAGTGATGTGGGTAGCATCACACTTGCCCTACGTACGCTGGGCAGCTTTGAGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0027515=EPSP_synthase=PU(39.8=42.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGTCTGTGCAGGTTGA
R:
TACGTAGGGCAAGTGTGATGC
Band lengths:
347-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]