HsaINT0106362 @ hg38
Intron Retention
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr1:11240303-11241681:-
Coord C1 exon
chr1:11241553-11241681
Coord A exon
chr1:11240548-11241552
Coord C2 exon
chr1:11240303-11240547
Length
1005 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACTTGTTTCCTTCCCCTCAGCCC
3' ss Score
9.47
Exon sequences
Seq C1 exon
GAGGCAGAAGGCAATGCAGGTGGATGCCACAGTCTTCACTTGCATCAGCATGCTGGCTCGAGCAATGGGGCCAGGCATCCAGCAGGATATCAAGGAGCTGCTGGAGCCCATGCTGGCAGTGGGACTAAG
Seq A exon
GTGGGTGTCAGAAACCTGAGCTTGCCCTGTATCAGCGTGAGGCTTGGCCCCCAGTGTTGGGACTGTTAAAAGAATGAGGCATGGTTGTTTGCACATTCAACTGGATGGACAGGATAGCTTAGACTAAACACACAGGCTAGTACTGAATCCTAGTTTCATCACTAGCTTTCTATATGATCTTGACTAAGTTATTTAATTTCCCCGAGCCTCATTTTTTTTTTTTTTTTTTTTTGAGAAGGGGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCCCAGTCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCTGGCTAATTCTTTGTATTTTTAGTAGAGTTGGGGTTTCAGTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCCACCTCGGCTCCCAAAGTGCTGAGATTACAGGTGTGAGCCACCGCGCCTGGCCTCATTTTTTTTTTTTAATCTGAAAAGTGGGTGCAATAGTAATTCTTATTGCCTAGGGTTGCTGTGGGTTCATGGTATAGTCACTCTTAGCACCATGCCTGGCATATAGGAAGTACTCAATAAATATTTGCAAATATTGTGTATATTATTATTGAGCAAGTTGCTTAAGCTTCCTAAACTAAGTTCTCTTCATCTGTAAAATAAGGACAGTGTTCTTAATCTGCTTCCCAGAGTGTTTGTTGAGACTTGGTCTTCTGTAGTGGCTGAATTATAGTGAGCAAGTCTTCTGTGGCAAGAACCAGAAACTCATAGATTGTTTGGAGACCTGAGACTAAGCCAAGAGAGTTTACACTTTTATTCTTATTTTATAATATCCTTTCTACTCTGAAGAACAGAGGCCTGATCCCCTTGCTGGGAGAGAAAGCTGTTTCTTCCCAAGAACAGACTGAGTGTCATGTGCCCAGCCCTTATGTGACTTGTTTCCTTCCCCTCAG
Seq C2 exon
CCCTGCCCTCACTGCAGTGCTCTACGACCTGAGCCGTCAGATTCCACAGCTAAAGAAGGACATTCAAGATGGGCTACTGAAAATGCTGTCCCTGGTCCTTATGCACAAACCCCTTCGCCACCCAGGCATGCCCAAGGGCCTGGCCCATCAGCTGGCCTCTCCTGGCCTCACGACCCTCCCTGAGGCCAGCGATGTGGGCAGCATCACTCTTGCCCTCCGAACGCTTGGCAGCTTTGAATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793:ENST00000361445:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGCAATGCAGGTGGATG
R:
GTTCGGAGGGCAAGAGTGATG
Band lengths:
346-1351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development