BtaINT0097089 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28705455-28706692:-
Coord C1 exon
chr19:28706532-28706692
Coord A exon
chr19:28705564-28706531
Coord C2 exon
chr19:28705455-28705563
Length
968 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTTTCCCTCCTCTTCTTCAGGGC
3' ss Score
11.85
Exon sequences
Seq C1 exon
ATCCGGGCTTTAGAATTGGACCCAAACTTGTACAGAATTGGACAGAGCAAGATATTTTTCAGAGCTGGAGTCTTGGCACACTTAGAGGAAGAACGAGATTTAAAAATTACCGACATCATTATCTTCTTCCAGGCTGTTTGCAGGGGTTATTTAGCCAGAAA
Seq A exon
GTGAGTAGAAAATCATGAACTAAATGCTTGAAGTGTGTGCTTGTGCTGAGATGTGTTTTGTACTAGAAATAATACAAAGGCATGCGCGACGTGAGGTCCCTGTCCTCGGGGTCTGAGAGGCAAGTAAGCAGGTAACGCGTTCTAAATAAGGACCTAAACAGTGGGCGGAGAGACAGTGCAGGGTCGGGTCCTGCTCAGTCCAGGTCCTCCACAAAGGCTTCTCTGAGCCTTGGTCTGTGAATGAGAGGCATCAACGTGATGACCTCCAGGAGGGAAGAGAAAGAGTACCTTAGAGAGAGGAATGTTTCTCCTGTGACAGATCCAGAAAGAAAAGAGTAACAGAGGAGTGATGAGCATGGCACAGGGAAGGGGGAGTAGAGCCTTGTTCAGACCGACACGGACACACACGTGTATGGAGGTAGTTGGCAGGGGATGTTTGGACCGCATCTGTGAACCAAGTGCCAGGTCCTGTGACACATGCCGAGGTCAGCTGAGCAGGCCAGTGATCCAGCGGGGATGTGATCACATCCCTGACCGCCAGCCCAGCCCTCCTGGATCGTTTGCCTCTAGTGAGTCTCCATGACAACAGCTGTCTAACACAGTTCTCTTATTTGCCATAGACTGGATATGTCCCTCAAATTCCTAGGTTGGAATCTAATCCCCAGAGGGATAGTGTTTGTGGCGGGGGGGGTGCTTAGGGGTGATTAGTGCATGAAGGTAGGGCCCTCATGAATGGGATTAGTGCCCTTGTGAGTGAGACCCCAGAGAGCTTCCTTGTTCCTCCACCATGTGAGGTGACAGCGAGAAGACAGCTGTTGGTGAGGAAGTGGGTCCTCACACAGGGAATCTGCCAGGACCACGGCTTGGCCTTCGGCCTCCAGAGCTGGGAGAGGTGACTGTCGTTGTTAATCAGCAGGACAAAAACACAAACAGGGTTTCTTGAACCAGTTTTCCCTCCTCTTCTTCAG
Seq C2 exon
GGCCTTCGCCAAGAAGCAGCAGCAGCTGAGTGCCCTGAAGGTGCTGCAGCGCAACTGTGCCGCGTACCTGAAGCTGCGGCACTGGCAGTGGTGGCGCGTCTTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
A:
NA
C2:
PF0061222=IQ=PD(14.3=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGGGCTTTAGAATTGGACC
R:
CTTGGTGAAGACGCGCCA
Band lengths:
270-1238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development