HsaINT0107468 @ hg19
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin, heavy chain 10, non-muscle [Source:HGNC Symbol;Acc:7568]
Coordinates
chr17:8417104-8422109:-
Coord C1 exon
chr17:8421949-8422109
Coord A exon
chr17:8417213-8421948
Coord C2 exon
chr17:8417104-8417212
Length
4736 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTTTTCTTATTGTTCTTCAGGGC
3' ss Score
11.53
Exon sequences
Seq C1 exon
ATCCGGGCTTTAGAATTGGACCCAAACTTGTACAGAATTGGACAGAGCAAGATATTTTTCAGAGCTGGAGTTCTGGCACACTTAGAGGAAGAAAGAGATTTAAAAATCACCGATATCATTATCTTCTTCCAGGCCGTTTGCAGAGGTTACCTGGCCAGAAA
Seq A exon
GTGAGTGGGTATTCACGAATTAATCGTTCACTGAGGAAGTGCTTGTGCTAGATAAGCATTGCATTTTGACCTGGGGTGCAAGAGTGTGTGAGACATAGTCTGTCCTTACAGAAGTTGCTTTATAGTGGCAGAGATAGTCAGGTAAATACATGAACATTCTAAGTAATGGGATGTTGCAATACAAAAACACACAAGGAGGCTGGGCGTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCTGAAGTGGGCAGATCACTTGAGCTCAGGAGTTCGAGACCAGCCAGGGCTTCATGGCAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCTTGGTAGCATGCGCCTGTAGTCCCAGCTACCTGTGGGAGCTGAGGCGGGAGGATCTCTTGAACCCAGGAGGTCAAGGCTGCAATAAGCCAAGATGGTACCACTGCATGCCAGCCTGGGTGACAAAGTGAGACCCTATCTCAAACACACACACACACACACACACACACACACACACACACACACACGGGGCCAAGGGGTATGGGGTCCTGCCTCAGCTCAAGTCCTCAGAGAATGCTTCTCACACACACACACACACACACACACGGGGCCAAGGGGTATGGGGTCCTGCTTCAGCTCAAGTCCTCAGAGAATGCTTCTCTGAGGCTGAAACCTCAAGGGTAAGAAGGCTGGCCCTGTGAAGGGAGGAGAGAGAAGCTTTTCAGTAAGGGAACTACAGCAGCATCCTGGCAAGAGTCTGGCAGCATTTGAGAAGGTGACACAGTCCAGTGTGGCTGGAGCAGGATGGGTGAGAGGGAGCAAGGTGAGAGAAGAGGCTTGAGAATCAGACGCTGGACAGGGGTTAGGAGTGCAGTGAGGGGGAATCTATACTGTCAAGGCCGCCTGGCTGCGGTAGGCAGAATCCATTGAGAATTGGCCAAGAATAGAATTGGGAGGGCCAGTTGGGAAGCTGTCTTAGTGATTTGGGTAGAAGATGATGGTGCCTGGACCCAAGAAGGTGGTGGTGGAGAACGAGAGAAAAGTTGTTAAATTTGAGATAGAATTCAAAGGACTTAGAACTGATTTGGATTTAGAAGGTAATACTGGTATTTACTTCTTTCTACTGAACACTTCGGGTTTGGGAGTGAGAGAATTTGAGACAGGTTGAATAGTTTGCCATCCAGACAGTTTTGAGCAAACAGAATCTGAACACCTGGACTGGAAGTCAGCACTCTGTAATAATGTACTCTACATGTGGGTTGGAAAACAGCTCTGGTTCCTGGGCAGTCTGCTTGCCCAGATAGTGGTCAAGAGGGCTTTAAACGGAAGAAGGTAAAGGCAATACTTGTGGATTTTTGCCTATAAAATAGAATACAGAGTAAAAAGAGTAGCATGGAAAGTTGAAGACAAATAGATGATATCTTCGGGTTGATACTAAGAAACATTTGGCAAAAAGGAGTAAAAGAATTGGGTTTTTATTTTATTTTTTTTGAGACAGAGTCTCGCTCTGTCGCTGAGGCTGGAGTGCAGTGGCGCGACCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCATGCCATTCTCCTCCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGGCTAATTTTTTGTATTTTTTTTAGTAGAGATGGGGTTTCGCCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCGGGTTTTTATATACTAATATTTAGATACTATATAAATAATAAAGAGAACCTGTTGATAGCAGAGACTCTCCTCACTGTATCCACTGAACTGCAGAATGCCTAACATAGCATAAGGAGTGAGCAATGGCAGGTGCCAGGCTAACTTCATAGAGTTAGCAAAAAACTTGACATCTGCCAGAAACATGCTACAACTATCGAAAGTGCAGGAAACGAAGTATATAGATATACTTTGTGCAGCTTTTTCATTGATCTAAACCTTGCTTGCAAAATTTTCAAGATAGAAAGTTAAAAACAAAGATATTTCACTTGCATTATTTCATCTTAAGGACTTAAAGCTAACAAATCCATGTAATCTTATATGTAAGCCAGCATGCCTTTGCCTTTGCAGCCCCTGCCCCTCAATATTTTATTCACACTATGCATATGGTAGGCTGGAACTTAAAATCAGGATACATCAAAAAAAGAAGATAACCTATTCAAAAGAACCAGATTGTACTGTGGAAAAAGGCAGAATAGTGCTTACAATAGTCAAAATAATAGGTATCTTTACAGAAATCCATGAACTTGAGCTTGAAGCACCCTGGAGGACATTGGGATAAGGATAAAAAGGGGGAAGGAGCTAAAGTGATTTTGAACACTTTTGAAGTCCACTTTCCAAACACTCGGAGATAGGTTGATGTCACAGCTCCCTCATGAAAACCTGGAGGACAGTGCCTGACACACAGGTGTAATAGAAATCAGCCGACCACTGCGGAGAAGGAAACCAGCTGCCTCATTCCACTAAACAAAGTGCCCGGCATGTTTCTGACTCATCATTTGACAGTTTTATCTCCCAGAGGGCCAAAGAAGCAACTAGGGCAGTAGTTTTTAATAAGAAGATTGGGTGAATTTGTACAGCATTCCTGAAGGAGATTGCAAGAATTGGAAGGTGGATGCTTAATAGATTCAAAAGTCATTTTTGAAACTTTTGTTTTTGTAGTAGAAACTCTTGGAATTAAGACTTGGCCAATCCCGGCCAGGCACGGTGGCTCACACCTGTAATTCCAGCACTTGTGGAGGCCGAGGCGGGGGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCAAGGCATGGTGGTGCACACCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCATGAGAATCGCTTGAGCCCAAGAGGCAGAGGTTTCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTGGCTAATTCTTTTTGGCTGGTAGGAATAAGTTAGAAGGTTTTGTAAGGAGCAAGAATAAAATCAGTTATGAAGCAGTGGGTTCAGGGAAAATTCTAACCAGCAAGGAGGAATTCGTTGGCAGTATAGCAGTTGTGGGATTCTTGCAAGGAAATGTGACAGGTAGGTAATTTTTGCTCTAAAACAGCAACTGTCTGTCTTTTCTTAAGACACTCCCACTCCTGATACCGCTGTTTGCTGGAGTGAATGAATAATTCAAAATGTTTTTCTTATTTTTTCCATCGCCTTCAATTGCTTCTCTTTCCCAGGAGAGTCCTATAGCTACTCCTGCAAGCCGTTATAAAAGGACTCCAGAGAAACAATTACAGATTATTTCTAGGAAATACCCAGTTAATTTACTCAACAAACATCCTCAGGAGGCCTGGAGTCTGTCGGTCACTTGGTTGTGCCAACAAAAATGCCTGGGCCATGATCCCTGCTCCTGAGGAACTCAGAGTCTAGGTGGGAGCGCAGCCGTGTGAGTGGACTGTCGGAGTGGAGCATCAGCACTGTTAGCGGGGCCCAGGAGACTCGGAGGCCGTTCTGGTGCTCTGGAATGCAGGGATGAGATGTCCAGTAGTGGGTAGTCCCCAGAGGAGTGCAGCGTGCCAGGCACTTGGATTTGGCTGAGGAAAAGCCGCTAAGTTCTGAGTCTGGGAGTCCTTTGTCAAGATCTAAAATGCAGCTTCGGTAGCGTGGTGGGATAGAAAGCCGACTGCTGGAAGCCAGGAAGTCAGTAATAGGAACGTTTGCCTGTGGACCCTGAGAGTTTCATAAGGAGTAGAAAAATGTCAGTTGTCTGTCGAAGGAACCGCAAGGTAATGAGCTTCATTTGGGCCTGGGGGTTGTTTTTGGCAGGAGGGGGGTTGAGGGTTTCTGTGTTCCTGAAGGAGAGTGAGAAATTGAAAAATAGTAGAGTGAAGGCGAATGGGAACTGGGTCTCAGACCCTGCTGTGGGGCTGAGGAGGTGACAGGGTGTAGTGGGAAGCCCAGGTATGGTCACAAGGAGGTGAGGGCTCCACAGATCTAGAGTCATCTCCAGGCCCTGGAGGAGGCCGGGCCGTAAATGAGAGACATTGACAACCCCATTGTAGCTTTTGAGTGCTGCGCTCCATTGCGGCAAAGTGGAGGGAAGGAGGAGAAAAATTACCTTGGGGGTTGGGGAGAAATGTTTCTTCTGTGACATATCAAAAGGAAAACGAGAGTAGCTCCTAAAGGCACGATAAAGAGAGCAGCACAGAGAAAACGGGCCCTTCTGTCTACAGTCTTCATTGCCTCAGGAAAATCGGTTTCTTAGTGTGCGCAGTGTGGGTATATGGCTGAGTGGCAGCAGGAGAATGTGCAGGGCAGCGTCCCTGAAGAAAGTCAGTGCAGGAACTGGTGCCAGGGGCCTGAGGTGGGCTGAGCAGGCCAACAAGCCAGTGTGGCTTCGAGCGGCCAGAACGGCTTCCTTGTGCGTCTCACCCAGGACTTGATTGATGCAATCATTCCCTATCCTAGACAAAGAAGAACACGGGCCTTTAGAAAGGCTTCTTATGACAACAGCCATTCAAGCACTTTTTTCTTTACATCATAAGTTTTTCTTATTGTTCTTCAG
Seq C2 exon
GGCCTTTGCCAAGAAGCAGCAGCAACTAAGTGCCTTAAAGGTCTTGCAGCGGAACTGTGCCGCGTACCTGAAATTACGGCACTGGCAGTGGTGGCGAGTCTTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-MYH10:NM_005964:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
A:
NA
C2:
PF0061222=IQ=PD(14.3=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)