MmuINT0103223 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68598698-68599228:+
Coord C1 exon
chr11:68598698-68598858
Coord A exon
chr11:68598859-68599119
Coord C2 exon
chr11:68599120-68599228
Length
261 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTTTCCTTACTGTTCCTCAGGGC
3' ss Score
10.01
Exon sequences
Seq C1 exon
ATCCGAGCTTTAGAACTGGACCCAAACCTGTATAGAATTGGACAGAGCAAGATATTTTTCCGAGCTGGAGTTTTGGCGCACTTAGAAGAAGAAAGAGATTTAAAAATCACTGATATCATCATCTTTTTCCAAGCTGTATGCAGAGGCTACCTCGCCCGAAA
Seq A exon
GTAAGTGGACCATGATGCAAGAGAGCATGAGATTGACAGGCTCTAGCCTTGTGGATGGTGCGTTCCCATGGGAGCAGCATCTGGATGAACAGATGCACATCCCAAACAACACACAGGCACCAGGAAAACACCGAGGGCCAAGAAATGAAACACAAGGCTTGGAGCTGTGTTTCAGCCGAGGTCCTGGGGAAGCCATGCCCCAGGGAGCTTTGCTGGAAGCCAGTCACACCCCTGAAGTGTGCTTTCCTTACTGTTCCTCAG
Seq C2 exon
GGCCTTTGCCAAGAAACAGCAACAACTAAGTGCCTTAAAGGTCTTGCAGCGGAACTGTGCGGCGTACCTGAAGCTGCGACACTGGCAGTGGTGGCGTGTCTTCACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.8=37.0),PF0061222=IQ=PU(81.0=31.5)
A:
NA
C2:
PF0061222=IQ=PD(14.3=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCTTTAGAACTGGACCC
R:
GTGAAGACACGCCACCACTG
Band lengths:
264-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: