RnoINT0096312 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55376211-55376784:+
Coord C1 exon
chr10:55376211-55376371
Coord A exon
chr10:55376372-55376675
Coord C2 exon
chr10:55376676-55376784
Length
304 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTTTCCTCACTGTTCCTCAGGGC
3' ss Score
9.58
Exon sequences
Seq C1 exon
ATCCGAGCTTTAGAACTGGACCCAAACCTGTATAGAATTGGACAGAGCAAGATATTTTTCCGAGCTGGAGTTCTGGCGCACTTAGAGGAAGAAAGAGATTTAAAAATCACTGATATAATCATCTTTTTCCAAGCTGTATGCAGAGGCTACCTAGCCAGAAA
Seq A exon
GTAAGTTGACTCCAACATCTCTACTAGGGTGGGGCATTGTGTTTGGACCGTGATTCGAGAGGCCATGAGATTGACAGGCTCTCACCTTGTGGATGGCGCATTCCCATGGGAGCAGCATCTGGATGAACAGATGCACAAACAACACACGGGCACCAGGAAAACACACAGGGCCAAGAGGTGAAACAAAAGGGTTAGAGTTGTGTTTCAGCCTCGGTCCTGGGGACGCCATGCCCAAGCGAGTTTTGCTGTAAGCCAGTCTTCCTGGGAACACCCCTGAAGGTGTGCTTTCCTCACTGTTCCTCAG
Seq C2 exon
GGCCTTTGCCAAGAAACAGCAGCAGCTAAGTGCCTTAAAGGTCTTGCAGCGGAACTGTGCGGCGTACCTGAAGCTGCGACACTGGCAGTGGTGGCGCGTCTTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
A:
NA
C2:
PF0061222=IQ=PD(14.3=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGAGCTTTAGAACTGGACC
R:
CTTTGTGAAGACGCGCCACC
Band lengths:
270-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]