BtaINT0097134 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14244609-14246050:-
Coord C1 exon
chr25:14245913-14246050
Coord A exon
chr25:14244736-14245912
Coord C2 exon
chr25:14244609-14244735
Length
1177 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTCTTTTTCTTTTCCCTCAAAAG
3' ss Score
1.6
Exon sequences
Seq C1 exon
GACCTGGAGGAACAGCTGGAGGAAGAGGAAGCTGCCAGGCAGAAGCTACAACTTGAGAAGGTCACAGCTGAGGCCAAGATCAAGAAACTGGAGGATGATATTCTGGTCATGGATGATCAGAACAATAAACTGTCAAAA
Seq A exon
GTGAGTGGGTTTGGACGTTCCTGGTGGTCCAGTGGTTAGACTCCACTGCATGGGGGAGTGGGTTCAGTCCCTAGTCAGGGAACTAAGATCCCACGTGCCCTGGAATGTGGCCAAAAATTTAAAAAAGTGAGTGGGGTTGAGTGTCTGGATTAAAATGACAGGCTCATCAGGACTATGGATACCTTCAGATACCTTCCCTTTTTTAGCCAGGTACAAGGAATTAAAGGCCAAACAAGCAGTTATCTCTGGCGCTGATGTGGCAGCCTTGTGGCCACTGTCAGGATGCAAGCATGCCATGGATGGGGTCCCTGGTGGTCCCAACAGTGCCAGGGCCACCGTGGAGCAAGCGTCAGGAACACCGCAACCAATGCAACCCCCAAGTTGTGCAAGGGAGGGCGGGCAATGTGCCCGAGACCAGGGGCCCCCTCACATTCTCACCACCCGCTTCCAGTTCCTAACAGAGGACCAGCTGTCCTGGGATTGAGGGGCTGCTGGGATGTGAGACTCTCAGCCCCCAAACCAGAAAAGTCCCAAGATGAGTCGGTCACCCTAGTCAGTATCCACTAAGCAGCCCCACTGTGAGTGGACTGCCTTTAGTCCTGGATGCCAGCTGGGCACTGACTGTGAGACAGGCTTGGCGTCAGGGGCAGGGCGTGCACGGTGCAGGAGAACCCAATCCTCGAAGGGCTTATGTTCTAGAGAGACAACAAGTAGATGATTGTACAAGCAACCACTAATTGCCATCATGATTGCTACCCTCTTCTAAGAGCAGAGCACTAGGGGATGGAGGTGGGGCATTCAGGGAAGGCTTCCTGGAGGAGGTGACATTTCAGTGGAAACCTGAAGAATGAGGAGCAGTTAGAGGGGGTGGAGGCACATCCCTTTAGGATGGTCCCGCCTGTTTGCAAGGGCCCTGAGGCCTGTGGTAAGAAAGGAAAGAGGGCCCCTTGGCTGGGACATAAGGTTGAGGGGTGGAGGGGCCTGAGGTGGGGAGTGGCTAGTCTTTGGAAAGCATTATTGTTGAGGAACTTATTTTCCCCCCTTTAAAACTCTAGGTTGCATTTGGTTATAGTGTAGATTATCCTTTCAACTGTTTATCTGGAAGTTACTAACAGTGAAACATAGGCCCCAGAGAAAAGGAAAAAAACTAATGATATTTCTTTTTCTTTTCCCTCAA
Seq C2 exon
AAGGAGCGAAAACTCCTTGAAGAGAGGATTAGTGACTTAACAACAAATCTTGCAGAAGAGGAAGAAAAAGCCAAGAATCTTACCAAACTGAAAAACAAGCACGAATCTATGATTTCAGAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.837
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(30.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(28.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGAGGAACAGCTGGAG
R:
CCAGTTCTGAAATCATAGATTCGTGC
Band lengths:
262-1439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]