MmuINT0103269 @ mm9
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14218035-14219070:-
Coord C1 exon
chr16:14218933-14219070
Coord A exon
chr16:14218159-14218932
Coord C2 exon
chr16:14218035-14218158
Length
774 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTTCTCCCTTATCCGCAAAGGAA
3' ss Score
5.76
Exon sequences
Seq C1 exon
GACCTGGAGGAGCAACTGGAGGAGGAAGAGGCCGCCAGACAGAAACTACAGCTAGAGAAGGTCACGGCTGAGGCCAAGATCAAGAAACTGGAGGATGACATCTTGGTTATGGATGATCAGAACAGTAAACTTTCAAAA
Seq A exon
GTGAGTTAGATGTGCCAGGCTTGCCTGGGACACGGCATATCAAGCACTAACAGTGGAACCACCCCATGAAAATGGAGGACAAGCAGCCACTTCAGTCAGTAACCACACGCCAGCTGCATCCCAGTAGTTCAAGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCATCAGCTAGGTCTGCTGTGGGCTGGGCCTATAGATCAGGACACTCATGGAGTAGTGACCTGCACTGTGGCTTACACTCTAGTGAGATAGAAGGAACCGTTACCATTGTAACCAGGGTCTGGACATGTTCACCCTGTTAGGAGCAGAACACTAGGGGATGAAGGAAGATATCTAAGGAGGCTTTCTGGAGGATGTGGCATGAAAGAAAACTGAGGGTCAATTAGAAATTAAACATTGACCTTCTGTGCAAAGGACCTGAGGCAGAGACAAGCTGCCATGAGGCAGGGATGGGACTGTCCCCTAGCTGTGCATGAGTGCAGGACACACTGTCATGAGGTGAGAAGTGGACAGCGTAGGAACTTCTTCTATTCAGAGCTCCTAGCCTGGGATTGAAATGGGGATTTTTTTTTTTTAACTTTTTGTTTTCTCCCTTATCCGCAAAG
Seq C2 exon
GAACGAAAACTCCTTGAAGAGAGGGTCAGCGACTTGACAACCAACCTAGCAGAAGAGGAAGAAAAGGCTAAAAACCTCACAAAGCTGAAGAGCAAGCATGAGTCTATGATCTCAGAGCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-Myh11:NM_013607:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.738
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(30.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(27.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGAGGAGCAACTGGAG
R:
CCTCCAGCTCTGAGATCATAGACT
Band lengths:
262-1036
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: