GgaINT0015069 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7639051-7639911:-
Coord C1 exon
chr14:7639774-7639911
Coord A exon
chr14:7639175-7639773
Coord C2 exon
chr14:7639051-7639174
Length
599 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ACTATTTTATTCTTCTTCAGGAA
3' ss Score
10.22
Exon sequences
Seq C1 exon
GACCTGGAGGAACAGCTGGAAGAAGAAGAAGCTGCGAGGCAGAAACTGCAACTTGAAAAAGTTACAGCAGATGGCAAGATAAAGAAAATGGAAGATGATATTCTTATCATGGAAGATCAGAATAACAAGCTAACAAAG
Seq A exon
GTAAGCATTGTGGGTCCATTTTCTTACTTTGTGAAAATAGTGCAGGATGAGAGAAAATCTCTTTAGCTAGAAGAGGAAAAGGTATACTTCTGATTATGGAGCTTCACGTGTAAATATTCACTAGACCGTCAGGCCAGCCTGTATTGAACAAGTTTCTGAGAGTTTTCCCATGCTTTCTTGAACAATTCAGAATTGTGAAAAATACTAGTATTGAGGTCCCCTGTGGTGACAGCATCTTAAAGAAAATCCCCACAGTAGTCAAGCACAATCAATAGAACATGTCTTAGTTTTTCAACCAAACTTCATGATTAAAATTGGAAGTAAACATGTATTCAAGTACTTCCTGAAGGGGATACTCCTCTGAACTATGCTCTTTACTTACCAGCCAAAGTGAGCGTAAGATTGTAATAACAGCAGATTAGAGAATATGGGAAATTTCAATACTGCTTTCTAGCCCCTCTGTATTCAACAAATGGAAACATACTGCTACAATCTCAGAGTATCCAAAGACAGTATACTGGACATTTTTTATTTGGTATAGAGATGCTTCATGATGACCGATGACAGAAACTTCTGTTAACTATTTTATTCTTCTTCAG
Seq C2 exon
GAAAGAAAACTTCTTGAGGAAAGAGTAAGTGACCTAACAACAAATCTTGCAGAAGAGGAAGAAAAAGCCAAAAACCTTACAAAGCTGAAAAACAAACATGAATCCATGATTTCAGAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003816=Filament=PU(3.7=21.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGAGGAACAGCTGGAA
R:
CTTCCAGTTCTGAAATCATGGATTCA
Band lengths:
262-861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]