BtaINT0097161 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29966516-29968855:-
Coord C1 exon
chr19:29968737-29968855
Coord A exon
chr19:29966713-29968736
Coord C2 exon
chr19:29966516-29966712
Length
2024 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCACCACGGCGATTCCGCAGGCC
3' ss Score
5.39
Exon sequences
Seq C1 exon
GGGAGCTAAGCCACCAAGTGGAAGAGAAGGCTGCTCTGATCTCACAGCTAACCAAAGGCAAGCAGGTCCTCACCCAGCAGCTGGAGGATCTCAAGAGGCAGCTGGAGGAAGAAACCAAG
Seq A exon
GTAAGGATGGATGCCTCCGTCTAGAAAGGTAGAGTCAGGTAGGACCTGAGAAGCCATGGAGCTGGTTGAGGGCAGTGCTGTGTCATGAAGTCTGATGCTGCTCCTCTCTTCCTTGCAGTAGGACAGGAAATGTTCTTGGAGGTTCCAGAACCTTGGCATTGGATCTCCTTCTTCAGAGCTAGAAAATTCTACCAGGGTGCTCCATCCTCGGAGCCCCTCTGTTCCCCAGTGGAGGGGCTGATAAACTCCCCTCCCCCACCACTGTACTAGCTGGGCCATCTCTGCCTCTGTGCATCTTCCCACTCTGCCCAGCAATCATTCCACCCCCTTGAAATTCCCTCCTCTCTCTCCCCCATCACTCTTTATGTATCACCAGCTACAACACCAACATTTAAGAACCCCCTCCTCCAAAAGGCTGGTTGGTTTGGAGGCGCTCTTGAAACATTTGCATAAATGCAAACACCATCATCATGTTCTTGACGTCAATATCAAGATATTTATAATTCACATCCCCCAACTAATCTGTCAACTCCTAGAGGGCAAGAATGATTTTTCCCCACTGTAGTAGTTAACAGTAGTTACAGCACACAGCAGAACAGTGCACACAGTGGGCGCTTAGTAAATGTTGTCGATGTGTGTTTGAGAACTAAAACACAAAACCAAGAGTGCCCAAAACTGCATATATATAGTTCTGGGGTTGCCATGTGCCAGCTAAAACTTACAGGGCACTTTTCTGGAATTCCAGCAAACTCCATCTGCCTCTCCTAAAAAACAAGAAAAAGTGCTGTATTTGTCTCCCATCTTTCTAGTATATGGTTGGGGTTCCTGGGGGACTTGTGGGACAGAGGGAGTGGAGAGAATCAGAGCCTGAGAAGGCCCCTTCCAGGAGCAGGGCTGTCCTTTGGCCAGGATGCAGAAGGAGCTAAGCTTTCCTTCCTGGGAAAAGTTTGTTGTTTATTTGTGTCTTTGTTGTTGTTGTTCAGCTGCTAAGTCGTGTCCTACTCTCTGAGACCCCATGGACTGTAATCCATCGGGCTCCACTGTCCATGGGGTTCTCCTGGCAAGAATACTGGAGTGGTTGCCATTTCCTTCTCCAATTTGTGCCTTTAAAAGTATGCAAATATATGAGTTACTGCACTGGGCCAACCAGAAAGTGTGCTGTGACCATTATGATGAGAGCACCAGTTTCCTCCCGACCAGGTAGAAGTGAGTGATGGAGGCCTCCGCCATGTCCCCCTTCTGCTTGGGAAGTGGTGGCAGGGCCGTGGAAACTGCACAGCTCATGTCAGAATTCCCAGGTGGGGACACAGCCCGCTGATGACACCAGAATACACTTTTGGGGTTTTCATGGTCACAGTATTCCGAAAGACTGCATTAAGTAGTGAGAAGATCAACCCCTTTCTGATTCTCCTCCAATTATTCTGATTAAATAAGAAAAAGGTCTCAATTCGGATGTTGTTGTTTAGTCAGTGAGTCGTGTCTGACTACTCTGTGACCCCATGTGAGCCCGCCAGGCTGGTTAGTAGTCCATGGGATTTCCCGGGCAAGAATACTGGAGGGGGTTGCCATTTCCTCTTCCAGGGGATCTTCCCGACTCAGGGATCAAACCCAAGTCTCCTGCATTGGCAGGCGGGTTCTTTACCCCTGAACTAGGAGGGAAGCCCCTCAGTTTGGATACCATCTCTCTCACACTGGTGCATCCTCCTTACCAAAACACAAGAGCGTAGGACTAGGAGACAGGGTCACAGCCGCAAATTACTCAGCTAGAAGGTGGTAACACTGTCTTACCTCCATTGCATTTATTCGATTACCTTCTGTTTACCGCAAGTGTTAATGGTTTTCCACTTAAATATAATAGTCTACTTTTTAAAAAGTGAAGTAAAACAGGAGCTATGCTGCTCCAGCGAAGTTTGTGAAGGCAGCAAGCGAATGGTTCAAGTTGGGAAACACTGATTGAAACAAAATTACTTACCCTGGAAAATGACCAAACGGTTTTGCAATTTGCCACCACGGCGATTCCGCAG
Seq C2 exon
GCCAAGAGCGCCCTGGCCCACGCCCTGAAGTCTGCCCGCCACGACTGTGACCTGCTGCGCGAACAGTACGAGGAGGAGCAGGAGGGCAAGGCCGAGCTGCAGAGGGCGATGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337:ENSBTAT00000035550:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.682
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(4.3=30.0),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(12.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]