GgaINT0129037 @ galGal4
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:307495-308499:-
Coord C1 exon
chr18:308381-308499
Coord A exon
chr18:307692-308380
Coord C2 exon
chr18:307495-307691
Length
689 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
GTATAATTTTAATTATACAGGCC
3' ss Score
5.77
Exon sequences
Seq C1 exon
GTGAACTAACTCGGCAACTGGAGGAGAAGGAGTCCTTGATTTCTCAGCTGACTAGAGGCAAACAGGCTATCACACAGCAGACAGAAGAGCTGAAGAGGCAACTAGAGGAAGAAAATAAG
Seq A exon
GTGATTTGTTTTAATTTGGTCCTGAAAATTGTAAAATAAATCAATGTGATAAAAGAATAAATGAGAGCTCCTCTGAGAATGAGACATCAACAGTGAAACTTCAGAACTTTGCCTTGGAGTCTAATGCAAGAAGAGACATTAGAAATTAAGTAAGACAATTTAAGCTCTTCTTACCATGCTTTCTGAACTTCAAATACAGGAGAAAAGTGAATGAGAATATCTGTGTATATGCTTTACTGCTATAGGAAATCCTTGATTCAAAGAATACAGCAGCAACCAGAAAATAAGAAAAAGATCAGGAGTGAACTACCCAGGATTAGAAATGACAGCATAGTTTAAAGTCTTTTCCACCTTCAGACAAACACCAAATTCTACCTGAAAAGCTTACAGGGAAACTTTTGGGGAGATTATTCCCACCTTTCCCACTGCAGTATTTACTGTATCTTGTCCTGAAGCACTTGGTGCTGATGTGTTTTAGAGGCAGTGTCCCAGACAAACTAAAGAAAATGGCCTGATCTTGATTAACATGATCAGTCTCAAACACAGAGTCCCAAATGCTGTTGACTTTTCTCCTTCAGTTACCCTAGCAGTGTGGTCAGTGAGAGGTGGAATTTTTATCAAAATGCAATACAAAGGTCCAGTCACAAATTGTTAATGTTTTGACAATTTGTATAATTTTAATTATACAG
Seq C2 exon
GCCAAGAACGCCCTGGCCCATGCCTTGCAGTCAGCCCGCCATGACTGTGATTTGCTCCGGGAACAATATGAGGAGGAGCAGGAAGCCAAGAGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGCGAAGTGGCCCAGTGGAGAACCAAATATGAGACAGATGCTATTCAGTGTATGGAGGAACTGGAGGATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.2=100),PF131661=AAA_13=FE(15.2=100),PF059116=DUF869=FE(50.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(16.9=100),PF131661=AAA_13=FE(25.4=100),PF059116=DUF869=PD(21.8=25.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAACTCGGCAACTGGAGGA
R:
GGCATCCTCCAGTTCCTCCAT
Band lengths:
310-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]