MmuINT0103314 @ mm9
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67171823-67173979:+
Coord C1 exon
chr11:67171823-67171941
Coord A exon
chr11:67171942-67173782
Coord C2 exon
chr11:67173783-67173979
Length
1841 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTTACCATTGTAATCCCCAGGCC
3' ss Score
6.88
Exon sequences
Seq C1 exon
GCGAGCTGAGCCACCAAGTCGAAGAGAAGGAGTCTCTGGTTTCACAGCTCACCAAAAGCAAGCAGGCCCTCACCCAGCAGCTGGAGGAGCTTAAGAGGCAACTGGAGGAAGAAACCAAG
Seq A exon
GTGAGGCTGCCTCTTTAGGGAAACAGCTATCAGATAAACCTGAGCAGCCAAGTAATGAAACCCTCGAGGGAGGCTGATGCAAGGTGGGTAGCTTAGAGGGAAGACTGGTTGGAGGCAGTACAGTGTCAATGATGCTTCATCTCTCCCTGCCCTTCAGTGTCATAATAACTTGTTCCTGAATGACAGGACCTTGGCATTAGACCTCTCCTCGGGACTAGAAAGCCCTAACAAGGCACCCCATCTCCTTTTCGCCTCCATCTCCCATCGGGTGGCCTGGTAAACGTCCCCTCCAGTCAGGAGCATCGCTTCCTACTACTGCACTAGTTAGACCATCTCATGCAGAAATTCATCCCAGCAGCTTAGAATGTCATCCTCTTTGTGGGCTACCTCCTGTAAGATAGGGTCTTAAGTATCCTTTCTCCCCAAAGACTAAATGGCTTCAGGGAGAACCTTTGGGTGTTAACATAAAAGTAACATCAACTTCAGCATCTAGATGCAGTCTGTAATACATGTCTACCCACTGATCTGGAAACCGATAGGAACGGTCTCCTCTCTTCCCACACTGTAGCTGAGAACAGTAAATAAACTCTCACTAGAACAGTGTCCACAGTAAGTGCTACTGATGCTAGTGTTGCAGGCATTACCATAGGAACCTAGACGTTCAAAATCCCGCACGAAGGAAGTTTGCTTTGATCTGGTTTGAGACTGCTGTGGCGTGGAAGAGATTTACAAGGCAGCCTTTGAAATTCCCTTTATCTTTCATTTCTGGCAGAGAACAGTACTGCGTTTATCTCTCGTCTTTCTATTCTGAGGGAAGGTTTTTGGTGGGCTCCGGACCAAGGAGGAGTGGTGAGAACCAGAGACCGATCAAGTAGTGCAGGTCCCTGGAGGCCAGAGGCTGCCCTTCCCCACCTCTCACTGCAGCAGTGAGGCTCCTTCCTTAAGCAGAGTCCTGTGTTTCACTGTCTCTTCTAAAAATGATGAAAATGCAGACATCACGGTCCTGGGTCAACAGAACTCTTCTCTTGGGTGGTGGCACTGGTATTGGAACCATTAAAATTATAGTGAAACCTTTGCCCTGTCCAGAAGGTAGTGAGTGTGAGAGGAGACTCCAGGCATCAGTTCACACCAGCACCAGTGGTCCTTAGTGTGGGGATGCTGGCCCCTGGAGACCCCAGAGGATGCTGTAGCTGTTTCATGGTCACAGTATCCCATCATACTGCACAAAGTAGCAAGATGATTAACTTTTCAACTGTTTCAATTCTTGGCCATTACAGCCATTGAAAGGCTTCAGTGTAGACAGCATCCCTTTAGCCGTTACTATTACTCAATTAAGAACAGAGGGCAAACTTCAAGCACAGAGCCACAACATGCAAGCTGTCTAGATAGATGCTGCTGCCGCTGCTGCTTTATGTCTGTGGTATAAATTTCTAATATTTCTTATGGCAATTTGGGAGGGCATTGAGGGAGGATTTTACAATGACCTAGAACTCACCATGTGGCTCAGACCGCCCTTGGATTCACCATCCTCTTGCCTCAGCTGTCTAAGTACTAAGATTAGAGATATGTGGTGCCATGGCTGGCTAAATATTAATAACTTTCTCTTTACTATGGTGCAACAATTTCTTTCTATTTTTTGCAACAATTTCCTATAAAAGTAAATATAATCATGGAGAGAATTTCTGAAAGTCAAACATTAGGTATACTGAAAAGGCAAAATCTGTGAAGCAACGTGGAAATGTTTCAAATTGGGGAATCATTCAAATTGGGGGAAATGATTCATATCTTCACTGGGAAGAGGTCCATGTGGATTCGCAATTGGTTACCATTGTAATCCCCAG
Seq C2 exon
GCCAAGAACGCGCTGGCCCACGCCCTGCAGTCCTCCCGCCATGACTGTGACCTGCTGCGGGAACAGTATGAGGAGGAGCAGGAAGGCAAAGCCGAGCTGCAGAGGGCACTGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACAAAATATGAGACGGATGCCATCCAGCGCACAGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-Myh13:NM_001081250:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.758
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGAGCCACCAAGTCGAA
R:
CCTCCTCCAGCTCCTCTGTG
Band lengths:
310-2151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: