GgaINT0129037 @ galGal3
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
NA
Coordinates
chr18:309091-310095:-
Coord C1 exon
chr18:309977-310095
Coord A exon
chr18:309288-309976
Coord C2 exon
chr18:309091-309287
Length
689 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
GTATAATTTTAATTATACAGGCC
3' ss Score
5.77
Exon sequences
Seq C1 exon
GTGAACTAACTCGGCAACTGGAGGAGAAGGAGTCCTTGATTTCTCAGCTGACTAGAGGCAAACAGGCTATCACACAGCAGACAGAAGAGCTGAAGAGGCAACTAGAGGAAGAAAATAAG
Seq A exon
GTGATTTGTTTTAATTTGGTCCTGAAAATTGTAAAATAAATCAATGTGATAAAAGAATAAATGAGAGCTCCTCTGAGAATGAGACATCAACAGTGAAACTTCAGAACTTTGCCTTGGAGTCTAATGCAAGAAGAGACATTAGAAATTAAGTAAGACAATTTAAGCTCTTCTTACCATGCTTTCTGAACTTCAAATACAGGAGAAAAGTGAATGAGAATATCTGTGTATATGCTTTACTGCTATAGGAAATCCTTGATTCAAAGAATACAGCAGCAACCAGAAAATAAGAAAAAGATCAGGAGTGAACTACCCAGGATTAGAAATGACAGCATAGTTTAAAGTCTTTTCCACCTTCAGACAAACACCAAATTCTACCTGAAAAGCTTACAGGGAAACTTTTGGGGAGATTATTCCCACCTTTCCCACTGCAGTATTTACTGTATCTTGTCCTGAAGCACTTGGTGCTGATGTGTTTTAGAGGCAGTGTCCCAGACAAACTAAAGAAAATGGCCTGATCTTGATTAACATGATCAGTCTCAAACACAGAGTCCCAAATGCTGTTGACTTTTCTCCTTCAGTTACCCTAGCAGTGTGGTCAGTGAGAGGTGGAATTTTTATCAAAATGCAATACAAAGGTCCAGTCACAAATTGTTAATGTTTTGACAATTTGTATAATTTTAATTATACAG
Seq C2 exon
GCCAAGAACGCCCTGGCCCATGCCTTGCAGTCAGCCCGCCATGACTGTGATTTGCTCCGGGAACAATATGAGGAGGAGCAGGAAGCCAAGAGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGCGAAGTGGCCCAGTGGAGAACCAAATATGAGACAGATGCTATTCAGTGTATGGAGGAACTGGAGGATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.1=100),PF131661=AAA_13=FE(15.0=100),PF059116=DUF869=FE(45.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(16.8=100),PF131661=AAA_13=FE(25.0=100),PF059116=DUF869=PD(23.3=30.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAACTCGGCAACTGGAGGA
R:
GGCATCCTCCAGTTCCTCCAT
Band lengths:
310-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]