BtaINT0097220 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53653425-53654889:-
Coord C1 exon
chr1:53654786-53654889
Coord A exon
chr1:53653564-53654785
Coord C2 exon
chr1:53653425-53653563
Length
1222 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGG
5' ss Score
6.35
3' ss Seq
ATCTGCTTCTCTTTCTACAGCAA
3' ss Score
9.63
Exon sequences
Seq C1 exon
ATGTGTGCCTGGTGTCTGAAAATCCCTCTGACTTTCACTTTTGCTCTCATGGAACAGTTGCTGTGGAGAGCTTGGATGATGCCGAAGAACTGCTGGCCACGGAT
Seq A exon
GTAAGGCTTGTTAGTTATCAGAGCAAAGTCTGGTAATGACAATGAGACATGGAAGAAAGCATCTTAGATCTCCTCTCTTCCTGGAGAAGTGACCTTCCTTCCCCGAGGGGTGGAGAGTGGAAGGTGCCCCTATAGGACTGCTTCTGTCCAGAGTTTTATACTTATTTATTTTGTCAGTATAGTAACTTTGATACATATAGAAAAGTAGGAAGATGCTTCAATGCAATGATAACCACTGTTTTCATTCTTTTATTTTTTTTCTCTTCGGGATTGCTGTTATGTAGTTGTTTTGGTGTTTTTTTAAATCAAGGATCATAATCATTCTACATATGCTATTTGATATATCGTTTGCTTTTTGATTAATGTTTAGCATTTCCAGTGTTATTACAAACTCTTCATAAACATTTAATGGATACTTAATATTTTATCAGACATTTGTTCTATAGTTTATTTAACCATTCTCCTATTGTTAGACTCAAGGTTGAGGGTTTGTTTTCCTACTATGGTGAATATCTTTGTAGGTGAGTACATTCCTGTATATCAGATTCATCTTATGCTAGATTTCTAAATGGTAGGATTATGAAATTTTATAGTCTCTCGATACATATTCTAAATTAACTACTAGAAGGATTACCAATTTCCACCCTCCTGGAGTGTGTGAGAACACACTTCTTACCATGTGCAGTGGCTTCCTAGGATGCTGTTCTTTGGTGACATAGTTCTTCTTTTCTTAAATACTTCCTTTTGCCAGTCGTCAAAATGAATCTGGAATAAATATGGGAGAACATATGGGATCCCAGAAATAAGCAACCCATCAGATATGGTGCTACTTTATCCCATAACCATGAAAGGCAAAATAATTGAGCTCATATAGCCAGTTAATGATAGATTATTGGAAGGGAGAAGAGAGGAACAGGAGAGAAGGCATCTGAGGAGAGTTCTAAAACTACTGAGTTAAACATCAAATCATATGCCTTCCTAATTCTCTTTTAAAGGGATGAAGAGGCTACAGGTGACCAAGAGCCAACAGGGCGCTTTCAAACCAATTTGCATCAGTTTGAACAGAACTGTCACACTTGAGGGCTGTGGTGATCCATCTCCTTCCCTCCGGCAGGCAGCCCATGGCCCACAAGTGGAGGGAGGTGTGATAACAGAGGAGGTGAGGTGCTTACTGCAGCCATTAGGCAAATGAGTACTTGGCCATCTGCTTCTCTTTCTACAG
Seq C2 exon
CAAGCCATGGACATCTTGGGCTTTCTCCCTGATGAGAAGTACGGATCTTATAAACTCGCTGGAGCCATCCTGCACTTTGGAAACATGAAATTTAAGCAGAAACCCAGAGAAGAGCAAGTGGAAGCAGATGGCACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGCCTGGTGTCTGAAAA
R:
CTGTGCCATCTGCTTCCACTT
Band lengths:
239-1461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development