GgaINT0119180 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90807951-90808474:-
Coord C1 exon
chr1:90808371-90808474
Coord A exon
chr1:90808090-90808370
Coord C2 exon
chr1:90807951-90808089
Length
281 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
TCCAATCGTTTTTTTCACAGCAA
3' ss Score
7.52
Exon sequences
Seq C1 exon
ATATGTTATTGGTCTCCACCAACCCATATGACTACCACTTTTGCTCCCAAGGAGTAGTTACAGTGGACAACTTGGATGACGGAGAAGAACTGATGGCAACAGAT
Seq A exon
GTAAGCATATATTGATTGACTCATTGATTGGGTGCACGGTGGGATGAAAAGTGATAGCGAGAGCCTAACTTATTCCACTGAAACTACTGGAATAAAATGGAAGCAGAAATGCAGTCTGCAGAAGGGCTGTTGTGAGATAATGCCTTTGGGCAGGTTAATAATATCTGCCATGCAGAAGTAGATTTTAGGACTGCAAAAAACAAACAAACAAAAAAAAAAACCCAAAAAACCATTGTCATTGAAGAGTCATGTGACAAAATATCCAATCGTTTTTTTCACAG
Seq C2 exon
CAAGCCATGGACATTTTAGGATTTGTGCCAGATGAGAAGTATGGTGCCTACAAGCTCACAGGTGCCATTATGCACTTTGGGAACATGAAATTCAAACAACGACCCAGAGAAGAGCAGGCAGAGGCTGATGGCACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCCACCAACCCATATGAC
R:
TTTCAGTGCCATCAGCCTCTG
Band lengths:
233-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]