RnoINT0096424 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54312364-54314107:-
Coord C1 exon
chr11:54314004-54314107
Coord A exon
chr11:54312503-54314003
Coord C2 exon
chr11:54312364-54312502
Length
1501 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
ATCTGTTTCTCTTCTCACAGAAA
3' ss Score
9.77
Exon sequences
Seq C1 exon
ACATGCTTTTGGTATCCACAAACCCCTCTGACTTTCATATTTGCTCCTGTGGAGTGGTTGCTGTGGAGAACTTGGATGATGCTAAAGGATTTCTGGCCACAGAA
Seq A exon
GTAAGACATGGTAGTTGTAGAAGTGAAGTCTGGTAAAGGCAGTGAGAAATGAAGCTAACATCATAACACGTCATCTTCAGGTCTGGGGATCTGGCCTTACGCCACCTGAAGGTGGAGGCTGCTTCTCTCCAAAGTTTACTAACTGGAGAATCACATATTTTCAGAAGAGTAGCATTAAAGCTAAAGAAATGTTGACAAATTTCAACTTTATAGTAAACTGTTAACTTACTCTAAAGTCTAAATTTTGCTTTCTATCTATATAGAGTTGCCTTGGTATTGTTATTTATTTATAAGTACACTATAAGACCATGTGGTCTATAGAGTTTGACTTTTCAATTTCATTTTATAAGCATTTTAGATAAAACCTCAATATGTTTTGGTCAGGCATTTGTTCTGTTGTTTATTGAATCATTCCTCCAAACGAGATTTATCCTGTCAATGTCTTAGAGAGTCTTTTATGTATTATATTCATTCAGTCTTACATTTCTATAAATAAAGTTATTGAAAAAGAATATTGAATGTAGACTCTTCCATGCTTTCTTTATACAAATTCTAATTAGTTACTATAATAACTACATTCTTCTGGGGCTACATGCTGTGTCTTCTTAGAGTACAGTGATGTGGTGATATTGTTATGGAGTTAGGAAACACCTAGAGACCATCTTAACTCTATCCAGTTGTAATTAGCTGAATATTATTTCTTCTGAATCTGCCTTAGGTCCTGTTGTTGCATTTGAGATTGAGGTCCAGCTTAAAGGGGAGGGCTCTTAAAGGCTAAGGTCACAATTACCTCATTTCTGCAAAATTTATGGCTACGTGAGGGACAGTCTCACTCCCCCAGCACACAAAGATAAGCAAATTTACATGAACTAGAGCAGTGGCTAATTACTCCACAGCAGTCAAATAATTCTGGGGAGAGGGTGAGGAGTCAGGGTTGCCAAGTATATCATTTTAGGAAATTAGGTCAGAAACAAAAGGCTACTGAAACAGCTGCTTAGCACAAAATGGAGTTGCCATTAGTCATCACAAGATGATATGCCTTTCTTGACACCTTTCACTGTTATAAGATGAGCAGGCTCTGGAATAAAAGCTGTTGAACATGTGGGACAAGCCCCCCAAAAGATTCAGTGATAGCTTTTATAACCATGAAAGACAGAATAATGAACCTCTCGTGGCCACTTAGTGACCCGTTGCTGGAAAGGAGAAGAGAGGAGCGGGGTGTTGAAGGGAACTACTGAAGCTACTGGACACTGGACAAGCCAAGTCCTAAGCCTTCCTAATTCCCCTTTAAAGGACTAAGCAGAGTGCTAGTGGCCAAGTGCCAAAGGGACCAATTTCCATTGCTTTGAGCCCAGCTGTCTCTGGGCCTGTGGTGTTCTGCCTCTCATTCCTGCAGCCCACAGTCTAGTGCAGGGTTGTGTGACACATGGCAGGGTGAGGTGCCTACTGGAGCCATCAGACAAAGGAAGGCACAACCAGCCATCTGTTTCTCTTCTCACAG
Seq C2 exon
AAAGCCATAGATGTCTTGGGATTTCTTCCTGATGAGAAGTTCGGGTGCTATAAGCTCGTTGGAGCCATCATGCACTTTGGAAACCTGAAATTTAGACAGAATCCCAGAGAAGAGCAGCTGGAGGCTGATGGCACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGGTATCCACAAACCCC
R:
TTTCTGTGCCATCAGCCTCCA
Band lengths:
239-1740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]