MmuINT0103373 @ mm10
Intron Retention
Gene
ENSMUSG00000092009 | Myh15
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49091075-49092792:+
Coord C1 exon
chr16:49091075-49091178
Coord A exon
chr16:49091179-49092653
Coord C2 exon
chr16:49092654-49092792
Length
1475 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
ATCTGTTTCTCTTCTCACAGAAA
3' ss Score
9.77
Exon sequences
Seq C1 exon
ACATGCTTCTGGTGTCCACAAATCCCTCTGACTTTCATATTTGCTCCTGTGGAGTGGTTGCTGTGGAGAGCCTGGATGATGCTAAAGAATTTCTGGCCACAGAA
Seq A exon
GTAAGACATAGTAGTTGTAGAAGTTAAGTCTGGTGAAGACAGTGAGAAATAAATCTAATATCAGACCACATCATCTGCAGGTCTGGAGACGTGGCCTTGCTCCTTTTGAAGGTGGAGGCTGCTTCTCTTCAAAGTTTACTAACAGTAGAAACGCATATTTTCAGTAGAGAGGCATTAAAACTGAAGAAATGTCAACAAATTTCAACTTAATAAGAAACTCTTTTTACTCTAAAGTATAAATTTTGCTCTCTATCTACATAGAGTTGCTTTGGTATTGTTATTTATTTATAACTACACTGTAAAACCATGTGGTCTATAGAGCTTGACTTTCCAATTTTATAAGCATTTTAGATAAAAACTCAATATTTTTTGGGTCAGGCATTTGTTCTATTGTTTATTGAACCATTCTTCCAAACTAGGTTTATCCTGTCAATATTTTAGAAACTCTTTTATGCATTATATTCATTCCCTTACATTTCTATAAATGAAGTTATTGAAAAAGAATATTGAATATAGACTCTTCCATTCTGTCTTTATATGTATTCTAAATTAGTTACTATAAAAACTACATTCTTCTGGGGCTAAATGCTTTGTCTTTTTAGGAAGAGGTGATATGGTGATATTGTTATGGAGGTAGAGAACATCTAGGGACCATCTGAACTCTATCCAGTTGTAATTAGCTGAATATTATTTCTTCTGGATCTGTCCTCAGTTACCATTGCTGGATTTGGGATTGAGGTCCGGGCTTTTAAAGTCAACTGTCACAAATACTTCATTTATGCAGAATTTACAGCTTTGTGAGGAATAGCCTCACTCCCCCAGTACACAGAGATAAGCAATCTTACATGAACCAGAGAAGTGGTTAATCCTTCCACAGCAGTCAAGCAGTTCTGGGGAGAGGGTGAGGAGTCAGGGCTGCCAAGTTAATCATTTCAGGAAGTAAGGTCAGAGACAAAGAGTTACTGAAATGTCTGCTTAGCACAAAATGGAGTTGCCCTTAGACATCACAAGATAACATGCTTTTCTTAACACCTTTCACCAGTTTCTAAAGTGAGCAGGCTCTGGAATAAAAGCAGTTGACCATGTGGGACAAGCCACCCACCCAGCAGATTCAGTGATAGCTTCTATAATCATGAAAGACAAAATAATGAGCCTCCTGTAGGCACCCAGTGACCTGTTGCTGGAAAAGAGCAGAGAGGAGCAGGGTGTTGAAGGAAACTCCTGGAGCTACTGGACACTAAATAAGTCAAATCCTAAGCTATCCTAACTCCCTTCTAAAGGACTGAGCAGACTCCTGGTGGCCAAGTGCCTACAAAGCCTATTTGTACTGCTTTGAGCCCAGCTGTCTCTGGGTCTGTGGTGTTCTGCCTCTCCTTCCTGTAGCCCACAGTCTAGTGCAGGGTTGTGTGACAAATGGCAGGTTTAGCCATCAGGCAAAGGAAGGCACAGTCAGCTATCTGTTTCTCTTCTCACAG
Seq C2 exon
AAAGCCATAGATGTCTTGGGATTTCTACCTGATGAGAAGTTTGGGTGCTATAAGCTCGTTGGAGCCATCATGCACTTTGGAAACCTGAAGTTTAAACGGAATCTCAGAGAGGAACAACTGGAGGCTGATGGCACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009:ENSMUST00000168680:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTTCTGGTGTCCACAA
R:
TTTCTGTGCCATCAGCCTCCA
Band lengths:
243-1718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types